RNA id: XM_026936972.2


Basic Information

Item Value
RNA id XM_026936972.2
length 1353
RNA type mRNA
GC content 0.41
exon number 3
gene id tifa
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12198342 ~ 12206875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTCGGGTTTAAGCCAGtgcaaACAGCAGAGCTCCGTTAGTTTGAAGATGAGTAGTGTGGTGTACAGTTACTGAGTGTTTCACTCCAAACCAGAAGACAGAAGCAGGAAGTGTTTAGGATCGTGAAAAGATAACATTCTAAGGAGAAGTCTTTTTTGAGATCATCCAGAACAATGttggctgtgtctcaaaccaTGGTGACGGAGGAAAGCCTCACCTGTCTCCACGTTCAGCTGTATCATCCAGACCAGTCCACGCAACCTCTCTACAGCCTTCTGCGCATGAGCCAACCTTACAAGATCAGCGCCGAAGATCCGATCAGGCTGGGCCGTGATGGACAGTCGTGCTCATTTGTGCTGAATGACGGCCATGTTTCCCGAAAGCAGCTCTCCATCCAGGCATATCGCAAGGCTGGTAGCCCAGACCTACGCTTCACTGTGCAGAACATGAGCCAGAGAGGCAAGATTATGGTAAACGGGTATGAACTGGGCCATCTAGAGCGGGCTGATCTGGAGGAAAAAGCCCTGCTCAGATTTGGCAAATATGAGTTGCTGATATGGAAGGAGCCTGGTGAGGCACAGGACAGTTTTGAAGTTTTGTTTGAAAAGCTGAATGTTTCCCCTTCAAGGGAAATGGGTATAGATTTGCCGTGCAGGATAGCAGTGATGGATACAGGTGTGAGAAACTATCAGAATAGATCACCCATGAGTCCAGAGCCACTGGAAAGTGACGAGAACCTGTATATGCAGCAGCCAAGAGAACATTTTTAGGGATCCGAAGATGAGTTCACCAAAAGGCATTCTGGGGTTATTTTATGTGCAAGGATGCGGATAAGGCTGCTGATTTCGCACATGACATTTCCTCATTTCATTGTGTGTGAGGACAGGCATGTTTTCAGCTTCAGACTTTTGGTTCTGTTCTGTCGttcttgtcatgttttattttattttattttatttttttcttgccttaactcagtttttttttattgttacttaAATACTTTTTGTAAATAGCTGACAAATAATTGAACAAAACGCCACTGAGCCAAATGTTTAgcttctctctatatatctataaCTGTCACAAACACTTAACAccacattattatttatctagAATCATTTAAATGTATGATATACTGATTAACTACCATGCATTTATTTAGTATGTACATATGTAGTGTTACATGAGCCATGCTTATGTACAGGATAGTATGCCATCCTATACCATCCTAAAGATCCATTATtcatattcttattcttattcttattcttattattattcttattaacaCCTTTGTTTAACCTGAAGCACAATactgttttaaacaaataaaagcaattttGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74720 lncRNA upstream 195228 12003990 ~ 12004223 (+) True G63061
TU74638 lncRNA upstream 261692 11934829 ~ 11937759 (+) True G62983
TU74622 lncRNA upstream 286345 11912850 ~ 11913106 (+) True G62967
TU74587 lncRNA upstream 335768 11862633 ~ 11863683 (+) True G62932
TU74270 lncRNA upstream 523756 11675313 ~ 11675695 (+) True G62654
TU74814 lncRNA downstream 41788 12248663 ~ 12249788 (+) True G63137
TU74788 lncRNA downstream 85639 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74948 lncRNA downstream 148675 12355550 ~ 12357681 (+) True G63241
TU74949 lncRNA downstream 150957 12357832 ~ 12358248 (+) True G63242
XR_003404040.2 lncRNA downstream 561710 12768585 ~ 12772822 (+) True LOC113540557
XM_026936836.2 mRNA upstream 76848 12099805 ~ 12122603 (+) True tnfsf10l
XM_026935824.2 mRNA upstream 106398 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936200.2 mRNA upstream 375303 11818766 ~ 11824148 (+) True gpr185b
XM_026935954.2 mRNA upstream 482712 11707459 ~ 11716739 (+) True zgc:92429
XM_034304103.1 mRNA upstream 494115 11644903 ~ 11705336 (+) False si:ch211-200p22.4
XM_026936132.2 mRNA downstream 85616 12292491 ~ 12295133 (+) True si:dkey-112a7.4
XM_034304074.1 mRNA downstream 85868 12292743 ~ 12295133 (+) False si:dkey-112a7.4
XM_034304097.1 mRNA downstream 301999 12508874 ~ 12670541 (+) True nlgn2a
XM_026936982.2 mRNA downstream 301999 12508874 ~ 12667002 (+) False nlgn2a
XM_026936983.2 mRNA downstream 301999 12508874 ~ 12667002 (+) False nlgn2a
XR_003403980.2 other upstream 502156 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1536044 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1633727 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1667923 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1668407 10530971 ~ 10531044 (+) True trnan-guu_13
TU74787 other downstream 85639 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1211502 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1263894 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1351748 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1498701 13705576 ~ 13719454 (+) False gc2

Expression Profile