RNA id: XM_026936973.2


Basic Information

Item Value
RNA id XM_026936973.2
length 2479
RNA type mRNA
GC content 0.48
exon number 12
gene id si:ch211-13f8.2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29681244 ~ 29692555 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCGGAGTAACACCGTACTGGCCATGCTGCTCCTGCAGGTATCTATTCTGCTTTGGTTTGGAGTCTTTAGGTTCGATTTCTCCGATGCACTCTCGGACCTGGAACCGATCCGGACTGAGTCAGCTCTTCTCAAACCGAAGGTGATGATCGCCATTCTGGCTCGCAATTCCGAACACAGTCTTCCTTTTTACCTGGGCTGCATCGAACGCTTGGACTATCCAAAGGACAGGATTGCTATCTGGGCTGCAGCAGACCACAGCGTTGATAACACGACGGCCATGCTGCAGGAGTGGGTGTCTGGAGTGGAGGGACTGTACCATTCCGTACGATTCCGGACCACGGAGCATGGGAAGAGttCCTATGCTGATGAGCTTGGTCCCAAGCACTGGCCAGACTCCAGGTTCAACCACGTGATGCAGCTGAGGCAGGCTGCTCTCCGATCGGCCCGGGCTCAATGGGCTGACTACGTCTTGTTTGCCGACAGCGATAACTTGCTGACAAACCCGAAGGTCCTGAGCCTGCTGATAGCCGAGAACCGCACGCTGGTGGCCCCCATGCTGGAATCCAGAACGCTCTACTCCAACTTCTGGTGTGGTATGACCACACAGGGATATTATAAGAGAACCGATTCATACATTCCCATTCGAAACTGGAAGCGGGTTGGGTGCCACGCCGTGCCCATGATTCACTCCACCATGCTGTTGGATTTACGCCGCCGCGCCAGCCATGCCTTGGCCTTCTACCCGCTCCACCAGCTCTACCCATGGATCCTGGATGACATCCTGGCTTTCTCCTTTTCAGCGAGACAGGCAGGAGTgcagatgtttgtgtgtaacaGAGAGCATTATGGGTATTTGCCTGTGCCACTGCGGACCCAGGAGACCCTGGAGGATGAGGTGGAGAGCTTCACCCACACTCTCACCGAGGCCATGCTTGATTTCGCCTTGGAGCCTTCACGCTATTTGCACGCGCCATCCAGAAACAAAGACAGAATGGCATTCGACGAGATCTATGTCATTAATCTAATGCGGCGCATGGACCGTAGGGAGCGTATGTTGCGCACTTTGGATGTTTTGGGGATTGAAGTCACACTGACTGATGCAGTGGATGGCAAAGCTCTGAACTCATCGCAGCTCCAGGTTTTAGGGATTGAGATGCTGCCCAGCTACCAAGACCCCTACTCCGGGAGAGTGCTCACTAAAGGAGAGATCGGCTGTTTTCTCAGCCATTACAACATCTGGAAGCAGGTGGTGGAACGTAAGCAGCGGCAGGTCCTCGTGCTAGAGGACGACATTCGCTTTGAACCGAATTTCAAGAGCCGTCTGAACACAATCATGGAGGACATTCGGCAGAAACAGCTCCAATGGGACTTGATATACGTGGGCCGTAAGCGGTTGCAGGTGAAGAATCCTGAACGCTGGGTGAAGGGGATAAAGAACCTGGTATACCCTGATTATTCTTATTGGACGCTGGGATACATACTCTCTCTTCAGGGTGCTAAGAAACTGCTGGAGGCGAAACCTTTGGGCAAAATGCTGCCAGTAGATGAGTTCCTGCCCGTTATGTTCAACAAGCACCCTACGGAAGAGTACCTGGTTCATTTTAAGCAGAGGGACCTGCTAGCCTTCTCAGTGGAACCTCTCCTCCTCTACCCAACCCACTACACAGGAGAACCAGGCTATAGCAGTGACACTGAGACATCCACCATCTGGGACAATGAGAGCATGAACACAGACTGGGACCGCCAACGTACCCATAAAAAGCAGAACCGTGGCGATGCAGCCCCTGTGCCTACTTCAGATGGCGGCAGCAGGGATGAACTCTAAGCTAGCCAATCACAGTGCAGCACTGGACAGCATGgggtttattacagtttatggACATCGAAATCTGGTCACATGGTGATCATATTCAAATGGTGCTGAAAACATACTGAGGAAAGATTCATGTGTCTTAAATGCttacaaatatgaaaaacagTATTAGAAAATTCAGAACCCAAGAGTTCTTTGGTTGTCCATTAATGGTTAcatgtagaaccctataacTTCCAAGTACCATTTCAGGATGGTACGAACCCTTAAATATTCAATGAGCTCTTAAAGAACCTAAGAAAATAAGTACCAATAATATGGAGTTTGCACCACACCTTTACCTAGTTAATACATACACTCTTGGGGGTTCTTCAATGGTTCTTTGGATGATTTAGATTTCTTAGCGTCTTTAAAAAAGTTCTACTTGAACCCTTTATTGTAGTGTTGTACATTGAACCTACACTGAAAAGTTTCTCCAGGAGGACAATCAAAGGGTTCTAAATATTTTAcccaagatttttttaaactataaaatGAATATCATATACTTTATGCTAATCAGCTCCAATTGATGTtcatttgtttagttttttttctgaaatatcaaTGTTTCTCTTACTTTACATTCCCACAGATGGAGAAAATCCCAAAGCCATTTCTTGAA

Function

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87036 lncRNA downstream 6974 29671187 ~ 29674270 (-) True G73452
TU87022 lncRNA downstream 73439 29607601 ~ 29607805 (-) True G73439
TU87006 lncRNA downstream 140888 29540095 ~ 29540356 (-) True G73423
TU86901 lncRNA downstream 360910 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 463086 29216270 ~ 29218158 (-) True G73319
TU87041 lncRNA upstream 18531 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 20338 29712893 ~ 29713446 (-) True G73458
TU87043 lncRNA upstream 21444 29713999 ~ 29714410 (-) True G73459
TU87063 lncRNA upstream 70950 29763505 ~ 29763791 (-) True G73479
TU87032 lncRNA upstream 72569 29765124 ~ 29765632 (-) True G73448
XM_026935978.2 mRNA downstream 14389 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA downstream 14389 29629970 ~ 29666855 (-) True LOC113539879
XM_026937014.2 mRNA downstream 88417 29576698 ~ 29592827 (-) True ripk2
XM_026937263.2 mRNA downstream 105830 29564221 ~ 29575414 (-) True LOC113540665
XM_034303979.1 mRNA downstream 150563 29519091 ~ 29530681 (-) True eif4a2
XM_026936229.2 mRNA upstream 823 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XM_034303650.1 mRNA upstream 1835 29694390 ~ 29705682 (-) False si:ch211-13f8.1
XM_026935844.2 mRNA upstream 32033 29724588 ~ 29730856 (-) False zgc:110366
XM_026935845.2 mRNA upstream 32033 29724588 ~ 29730856 (-) False zgc:110366
XM_026936015.2 mRNA upstream 39710 29732265 ~ 29748113 (-) True cdc14aa
XR_003404065.2 other downstream 105517 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 156183 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 156557 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 157332 29523723 ~ 29523912 (-) True LOC113540698
XR_003404076.1 other downstream 157778 29523394 ~ 29523466 (-) True LOC113540702
XR_003403975.2 other upstream 32033 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 326951 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1049114 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1080908 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2174527 31867082 ~ 31870008 (-) True LOC113540068

Expression Profile