RNA id: XM_026936976.2



Basic Information


Item Value
RNA id XM_026936976.2
length 1656
RNA type mRNA
GC content 0.39
exon number 5
gene id fis1
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16343344 ~ 16349401 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTGCTCAGAATTTCCGGCAACATGGAAGCAGTGGTGGAAGATGTCGTAGCTCCAGAAGATTTAAagAGGTTTgagaaaaaatacagcttggAACTGGCAAAAGGGGCTGTGTCCAAAGACACGAAATTTGAGTATGCATGGTGTTTAATCAGAAGTAAATATACGAACGACATAAGGAAAGGGATTCAGCTATTAGAGGAGCTGGTACAGAAGAGCACAAAGGATGACCAAAGGGACTTTCTTTTTTATCTGGCTGTTGCATACTACAGACTTAAGGAATATGAGAAAGCTCTAAAGTACATTCGCATTCTGCTTAAGAATGAACCTGGAAATAAGCAGGCCATTGAGTTGGAAAAGCTCATCAATCAGGCACTAAAGAAAGATGGCCTGGTTGGCATGGCTATTGTTGGGGGCATCGGCTTGGGCGTGGCAGGATTAGCAGGACTGATTGGGTTGGCTGTGGCCAAATCTGGAAAATCCTAACAAGGAAATGAGGCGTTATAGCTCCGAAAGAACAAGGTCgattaaaaaccatgaagattgGCTTATCATCATTAAACAGGATGTGGACTGCCTAATATATCTTACgttgttttcttttctggttttttttctgcttttttaacttgcataaaaagaaataatcacAGCATCACTTTTACAGAATAGCCTCATATGTTAtcttttttgtgcatgtgttttaaaatctttGAGTGAAATATCTACATAATAAGTATTTCCTTTCACACgtgtttaaaacacaaaaacataatggCAGTGTAAATTGTTAGCAGGTTCTAATTATAACTAGAGTTGTTACACTGTAACACCTTAAgttcatatttatacattttgcatAACATATGTGCAATACATAAATCTGTTTCCATGCAgctgtctctttcttttaatATCGAAGTGCTGAGGTTGTATAGTGTGATATGACCGAAGTCCGACTAAGTCTCCTCGTAATCACAGATACCTCTGTTACTTTCCAGGTATCTTTGTTATATGTGGGATTTACTGTCACGTGTGTGTACTGTATCGTTACtggtgcgtgtgtgcgtgtgtgtatatgtgtgtgtgtaatctgagTCTGTGTGCACATGGTTTTCATGCTAATCAATAGTGCCCAGTTTCACTGAGGCACCTAGAAAGGGAACTAATTTTATCAGGATCCATACAATTAATGGGTGTATGAGTTGAAGGATAATATACCCATCTGTACATGATGCCAACTTGTGGTTTTACAACTAAAATGTGCTGTTAACCTTTTTAAACTGGATGTGTTGTAAAAGCAGTGTGTGAGCTGCAGTGTGATCACACTTTACCAGTCTATGTCTAGCTCTAACATCAAGCAGAACTGATGCCATTCTGCCCTGAAAGACTGAGTCAAAACAGTAGTTGGGCCTTGAGAGAAACAAATTGCTTATTGAGTTTGCACACATAACCTTGTCTCGTGGTCAACAGTCCTGTGAACAATGCTGTGGGCTGTTCTCACATCGTTGTTCATCCCACCTTTCCATCACTTGGATCTAAGATCATTTTGGTACGTCACTGGTTTTTACAACAGGATAGATTATAGCTGCCATCAGTAATGTTCTTTATGTTCCACATTGTTGTTAAAAATTAACTGAAGTAAAAGTGAATGATGAC

Function


GO:

id name namespace
GO:0000266 mitochondrial fission biological_process

KEGG:

id description
K17969 FIS1, TTC11, MDV2; mitochondrial fission 1 protein

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 112229 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 279883 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 288199 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 341883 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 472573 15869198 ~ 15870771 (+) True G65115
TU77409 lncRNA downstream 42728 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 81060 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 82544 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 165236 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 220286 16569687 ~ 16577737 (+) True G65580
XM_026935826.2 mRNA upstream 24178 16310213 ~ 16319166 (+) True LOC113539780
XM_034303999.1 mRNA upstream 24178 16311214 ~ 16319166 (+) False LOC113539780
XM_034303998.1 mRNA upstream 33187 16299941 ~ 16310157 (+) True mus81
XM_026936115.2 mRNA upstream 44623 16291819 ~ 16298721 (+) True ovol1a
XM_034303836.1 mRNA upstream 59060 16278990 ~ 16284284 (+) True LOC113539958
XM_026936718.2 mRNA downstream 3360 16352761 ~ 16355963 (+) True cldn15a
XM_026936717.2 mRNA downstream 6840 16356241 ~ 16366191 (+) True dnajc3b
XM_026937153.2 mRNA downstream 18566 16367967 ~ 16370957 (+) True LOC113540582
XM_026937150.2 mRNA downstream 22596 16371997 ~ 16411701 (+) False chd3
XM_026937149.2 mRNA downstream 22600 16372001 ~ 16411701 (+) False chd3
XR_004578074.1 other upstream 24178 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 303360 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1684408 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2074004 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2623890 13705576 ~ 13719454 (+) False gc2
XR_003404046.2 other downstream 18555 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 411118 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 411348 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 411580 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 411865 16761266 ~ 16761338 (+) True LOC113540743

Expression Profile


XM_026936976.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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XM_026936976.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_026936976.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.