RNA id: XM_034303973.1


Basic Information

Item Value
RNA id XM_034303973.1
length 2712
RNA type mRNA
GC content 0.43
exon number 4
gene id ppp1r14bb
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14229973 ~ 14253890 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgagactgtctgtctgtctgtagagGGGGTTACACACAGTgatctacagcagcagaagaggaagagagaagggagagaggaGGGGAAAAGGAAGGACAAAACGACtggtgagaagaaaagaggaGGAATAGAGGACtgtttgttttcactgttttatgTCGATTTGAATAACGttaaggaggaaaaaaaccGCGTTCAGAAGAGCAAGTTGATTTGCACCAGTTTTGCATGAGCTGGAGAAAGAgagcgcagagagagagagagagagagagagagagaaaccctgagtgtgtaagtgtgtgtcttCTTCTCAGCTCACAAACCGACACGTGTTGAGCTTCACTCTACTTCATCTAGAGTTTAACCTGCTCTAACGTTCATCCAGGAGTGGAgctttagctgtgtgtgtgtgtgagagtgtgtatgtgtgtgtgtgtgtgtgtttactgagaCGGACACACTCTGTTTCATCTTCACGTGGCGTTTTTCACTCACACTGAGCTGAGCAACACGGCGAGGAAAAGCCCAGAGCAGAGTTTTGTCCCGCTGCTCTTCCTGAAGCGTCCCGGACTATGGCAGCGGTAACAACCCCGGAGTCGAGCCCTCAGCCCCGGGTCTACTTCCAAACCCCCCCCGGTACCGAAGAGAGCGAGCCCCCGGCCCGGAAACAAGGCCGGGTTACGGTGAAATACGACCGGAAGGAGCTGAGGAAGAGACTGAACTTGGAGGAGTGGATCATAGATCAGCTTACAGAGCTGTACGACTGTGAGgAGGAGGCGATTCCTGAACTGGAGATAGATGTGGATGAGTTATTGGACATGCAGAATGATGAGGATCGCGCTGCACGTGTTAAGGATCTGCTGGTGGACTGTTACAAACCTACTGAAGTAAGCACATTTTTCATAGTCGAGTTGCTTGACAAAATCCGCGGCATGCAGAAGCTCAGCACACCTCAGAAGAAATGATGCACCTATAGCCTCGGCTCCTCCTCCTAACCCTCCCCCAGCCAATCCCAGCTTCTTCCTCTGCTTCGCCAGGTGCTCGATCACATGAGGTGGAGGGGGAAGTGAGGTGACTGGGGAATCTAGCCAGTCAGATTCTTATAAGCAGggcttatttttgttttcttcattttgttaaCTTTATggtatattattttttttctaaaagggGAAAAGACTTCATAGTGTTTTGAAGCATTTGTAGAAATCCTAGCAATATATTTCTACACATACATTTTTAGATGTTAGGTGACTGTGTGAAATTTTGCTCTGATGCAATACTGTACGCGTGTCCCCAGTGGACAACACTCGCTTCAAACATGCTGTTTGTAATTctcaaatgtcaaaatgttaTGACCCTTACTGCAATATAGTAAGTTGGAAAAAGATAAGATATATGCGGCcttgtcctttttttctgtttttttttttaaatgtattcctTCATTTTATCTTGGGGGTTTTTCATACAGCATGAAAGAGCTTTGCAAGGGAGTGATGTAGATCTGTTCTGGGTATGATCTGGATGAGGATGAGGTGGATGGTAGTGGAAAACTGGAGCTTTTTTGAGACAAGCAAACCCACATACATAGAAACacacgtttacacacacacatgcagacagacgGGCGTCACCCCCCTCAGGGATCAGTGGGAACATATACCACACACCACAGCTGTGGTTATTAGGCCccaaactcacacacagatgtgcACGATGCATGTGGAGCACAGAGGGAGATGACGGCATGCTGGAGAATCTCGTGGCTTGCCATGAGGTCTGCCAGTTTATAAGATCCCgattaatgttttcatttgattcTGTTAAATCATCTTCTTTAGAAAGCCATCTGCTTCCTTTCTCATAGCCGATCAAACACAACAATAATAGGGCTAATCACATATTCCATGCCTGTCAGTGGACTGAGTGGCCCAGTGCTTCACTTTCAATCCCCCATTTTTCACATTCATTCAATATACACAAACGAGTGCACAGCCTGTTAATGGGTATGATATGTTATCTTGTAATGACTGTAATTAGTAACTCCACATGATCGGGAGTCAAATACAAGACAGAGAGTCCCTCTAACCACAGCTCCTATGTAGTTCCTACTAATTTGTGTCCTCCTCTCTCCATCCAGCCCTCATCTTTTCCCAGTAAAAATACCCTTTTCTATATCAGACGTTGCCTTAGTACATACCTGTATACTACGTTACACAAACCAAATAAATGGAGGCATTCATTATAAAAGAGCAATTTGAAACTTTTCAGGCTGTAGGGTTCAAAACCTCCTCATTGTACTTTCCTTGATTCTGCTTTCTAGAAAAAATAAGTTGAATCCATTTGAAAGTTGAATACAAGTTGAAAGGTAATTTTTAGatgtgcataaaataaaatggacttgtccattttattagtgtgtgtattatatcaggtaaagctgttgtttttttttcctacaacagcacacagaATATGCTAAAATCATTAACTAAATTTAGTAAGACACATGATGTATTTGATAAAATGCAGACATCTGACATTAGTCTGTAATTGAAGGTCATATTTGGTGGGGTGGGGGGAATTTATGAGAAAATGTAGCAATAAATTTTTGTTAGTTTCCTGGGTTTGTTAAACTTTAtgcaactttaataaaaaatattgaaaata

Function

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17555 PPP1R14B; protein phosphatase 1 regulatory subunit 14B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76204 lncRNA upstream 173086 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 187559 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 212304 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 216555 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 217658 14012098 ~ 14012315 (+) True G64102
TU76367 lncRNA downstream 41112 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 42380 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 426316 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 508445 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 723436 14977326 ~ 15011493 (+) True LOC117597182
XM_026937054.2 mRNA upstream 78684 14092494 ~ 14151289 (+) True slc8a4b
XM_026936442.2 mRNA upstream 149937 14064494 ~ 14080036 (+) True hspa12b
XM_026936120.2 mRNA upstream 190366 14035207 ~ 14039607 (+) True nagk
XM_034303354.1 mRNA upstream 213848 13993592 ~ 14016125 (+) False m1ap
XM_026937055.2 mRNA downstream 1854 14255744 ~ 14269340 (+) True brms1
XM_034304046.1 mRNA downstream 1854 14255744 ~ 14269340 (+) False brms1
XM_026936436.2 mRNA downstream 102158 14356048 ~ 14379551 (+) True LOC113540157
XM_026936433.2 mRNA downstream 322507 14576397 ~ 14622524 (+) True LOC113540153
XM_026936434.2 mRNA downstream 378170 14632060 ~ 14647239 (+) False zgc:194930
XR_004577999.1 other upstream 510519 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 667707 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 754936 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 811277 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1934850 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 1854 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 378140 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1769305 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2056323 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2114066 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile