RNA id: XM_026936981.2


Basic Information

Item Value
RNA id XM_026936981.2
length 5473
RNA type mRNA
GC content 0.45
exon number 5
gene id efnb3b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12795941 ~ 12861217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTGTACGTGTGGATTCTCAGGATGGAGCAGAATAAATAAAGGGTTGGGAGAATTGTGCAGGCTGGATAACACCGCCTcatgttacatttaataaaacccCAAAGAAAAATCCACTCGGTTAGTGCAGCCGCCAGCCGGAAGATAGGGCTTTCCCCCTTTCCCCTCCCTCTCCTTTTCTCCAACAAGTCAGTCTGTCAGCGAGCTAGGACAAATCTCACCACAAGGCTTTTCAGCAGCAAGTGAAGGAGACAGGAGCACGAAGCGCTCTACTAAAGCCATAACCCACCGGGATTTAGCCATCCAGCACCACCGCACACTCATTCTCTGCCTTTTGCCTCTCTATTGAGCGCATTAATCAGTGTGCTagagtttaacatttatttctgctttctTGGTTTGGCTGGTTGTTTTTATACACATGCCCACATCTGAGCCCTGCACGCCAGGCACGATCGGTTTCATCGAAATCCAGTGCGCAAGAAGCAGCCGGAGCGAGTGAAGCGCTCAGAGCGCTGAGGAATAGCGAGGAGAGCGCAGGAGAGCAagtggaggagagaagaggaggaaaaacaaGGAGAACAAGACAGGCACCGTCGCGGTTTGCTTTCTGAGAATGTAACTTTGCGAGGCCAAGAAGCGCATTTCGTTTTAATCACACATCCATCTGTTCTCatgctttgatttttttattattattttttttaattttctaattttttgcATCCTTCATCTCTTGGAAGAAAAAACGCAGCAGAAGAAGGAAGGGACGAAAAAGGGTAATGGGAAGGAAGAGAGATCTTGCAGCCGAAGACAGCGCGAGAATTTCAATAAAATTAGACTCTTGCCAATTGTAAAGCTGACAACCCCGGATTAAAAGCGACTCTGTGTCAGGATTGGTGCTGTTAGTGGAGTTTTCTTTCCACGACTGACAGAGCACAGACTTTGAGGAAAGAAGATAAAGCCGACAATTAAGAAATACTAGTCTAGTCGTTTTGGGGCTTTCTGTAAAGTGTGCCTTTACAGAATATTTAGTGGGATTTCATCTGCTTCATCTCAGAGCGGATAATCCAAACTCGACAGTAATAAACCGTGCGGGGTTTTTGTGCCTTTGGTGTTGTGTTGATATCCATGCGGACACATTGCGCTTTAACGCACTGACGGATTCCCCCTGTAGCCTTACTGAGCTTTAGGCTTTGTTCCTGAAGGCTTCCTCCTGCTGTGTTCTGGGGGAAAATCTCCTTTATCCATGATGGGGGAACGCAGACCGGGTTCTGGGCTTGACATGGCGAGTCCGAGCTGTGCAAACGCGCTGGGATTTCTGCTCATATTATTGGTGGATTTACTCGGAATCACGGCGACGAACATGGAGCCAATCTACTGGAACTCCCTGAACAAAAGGTTTAGTGATGATAGGGGTTATATCCTGTACCCCCAGATAGGGGACCGTCTGGACCTCATATGTCCTGCTTCGGACCCCCCAGGACCCCGCGCTCCAGCCGAGTATGAGTACTATAAGCTATACCTGGTGTCCTCCCGTGAGCAGGCAGACAGATGTGAGGTGACAGGATCTCCAAACCTGCTACTCACCTGCGACAAGCCCAACAGTGACATGCGCTTCACCATCAAGTTCCAGGAGTACTCGCCCAACCTCTGGGGACATGAGTTCAAAACCATGCACGATTACTACATCatcgCCACATCGGACGGCACGCGTCAGGGGCTGGAGAGCAtgagaggaggagtgtgtgcCACACAAGGCATGAAGGTGGTGCTGAAAGTTGGACAaaGTCCCTACGGATTGCCCCCAAAATCTGCCAAACCGGACCAGCCAGGTCATACTAACACCAGAAACCAAGGAGGCAGTGGGAACACAACTCTTCCTAGAGTGCCTGGTGGGGGCGGAGCCACAGCAGGCGGTGCAAATGGTCCTCTCCCCGCCTCCAACATTGCCGTCATCGCAGGAGCAGCTGGAGGCTCCGCCTTCCTCCTTTTGGTCACTGCAGTCATTTGTGTGGTGTGCTACCGCCGGCGGCACTCGAAGCATTCAGAGTCGCACCACCCGCCGCTTTCTCTCTCATCCCTGACCTCACCTAAGCGCGGGGGTGGAGGAGGGGGTGGCAACAACAACGGCTCTGAGCCAAGTGACATCATCATCCCACTGCGCACTTCAGACTCGGCCTACTGCCCGCACTATGAGAAGGTTAGTGGGGACTACGGGCACCCAGTCTACATTGTGCAGGAGATGCCACCTCAGAGCCCCGCCAACATCTACTACAAAGTATGAGGACGGGCGCACAGCATTAATGCCAGCCTGCAGTGCCCAGACCACGCCCCCTCACCTACTACCTAAACCATAGCAGTATGAACCGACTTCTCCTGTATCTCTGCAGTCTCAGTTCTGACTGTGAAAGCCCCAAACCCTGTGACTGAAACCCactctcacccacacacacacacacatacacacaaacagacacacacgcacacacatatacacatatacacacgcctCCTAAACCTCTGACTCTTGTAATCAGGAGGAGCGTGTTTTATGTATTGAGAGAAAATCCCTGTGTGAGGgctattttttcttcttctaagaGCATGCAAAGCTCTCATAACATTAATCCAGATCCCTtggagcaagagagagaagcaaTAGCTTGATGTCTCTTGATGTCTCTTGAAGGTGTCCCTGAGAAACACACCGTAAAATGAACCATTGTGAAGTAACGgcaaaagtgaaataaaacaaactaaaaaaagagagaaactgaaAGTAAACTGACCCTAGATGATGTTACCTGAACTTGAACACTACAATAACTCACAAATAGCAGTTTAGTTTGTCccatttgtgtttgttgttcCTCGGATAAGAGGAACCTGGCACCTGGCTCAGCCAATTACAATGCAGTGCTGCCATCACATGACCCAAGGCCCTGCATTTGATTAGAGGAGCCATAGCATCGCATTGAAGATcttgtatattttaataacGTGTGTATTTTGTGAGTGTGTAGGGTAATAATTATGACACTGCTGTTGCACAGTGCGACAGTGAGTGCGCATATCGTGTGCTTTAGTtacagtgtgttggtgtgtgtgtgagtgtgagtgagtgtgtttatctgtgaGAGAGCATTGTACCTGAGTGAATGTGAGTTAGACTGtttcaaaaccaaaacacaaaaaacgaGCGAATatcaaaaagtgttttttttatcgcTTTCATTCAATAtagaatataattatatatgaatattcagtaaaattatttctagatgtccttttcttttttcaagaTGTAAAACACCATATCTGTTTTTAgaccatttttttctgcttttcttttctgtgcTTTACAAAGAGCTGACCCTGTTTCTTCTTTGTACTGTAAGTTAATTTAATACTTTGTATTTCATTTCACGaaggttttctgttttattttgaccCCTAGTCATTCCTCATTTCCCAGGAGTCTCCACTCtccatgtatatttttatagctCCTTGTACAATGATGTAGTTTTGAAGCTAGACCTCGTTTTGTGAAAGTGTTGAGGTAGAGGCACAAtctgagaagtttttttttttttaatgtgcaaagacactttcttttttacaaaaaaaaagaaaaaaagaaagagggtgGGGGTAAAGAAAAGAATGCCAGAGCTGCCtatgaaggaaagagaaaagatgaacagacagaaGTGCAGGGTAAAGACAAAAAGTGATGGGTGGGGGGGGGATCCTCGAAGGAGGTCGTCAGGATGGGGGAGGATGAAGGGATGGAGGAACACAGAAGGAGAGATGGAGCAATGGAGGTGGGTTTTTAACAGACTCTTGAAAGAGGTTGTGTGAAACAGGGGCTTGGGAAATGCAGGATTCTCAACTACACAGATGGAAAAGAAAGGGGATTCACTCGTTCTGTCTCTCAGTTGGAGAGATGGAAATAGGCTTTCGTACACCTGCTCGTACTTTTCTGAGGTGGAAATATTTGAGGCTCAGTTCAaattctttcactctctcacaaCACATCTTAGTATaatacaacacatacacacacacattccacagctTCAGAAAATGAGAATGCACTTGAAAAGGCACACAAgtctttcaacacacacacacacacacacacacagacacactgagtaCACAATCAAAATCCATTCTGGATGTCCGCATAGACGCTGATTACCTGAAATGAATTCTGATTggactctcacacacaaacacacatgcacacacattcagattACACCCATGCATTCCAGGactaaagaacacacacaccatgtgtgTGTCCGATTGTGCCAACGAGAGTCTCATATTTTCAGAATGTGCTCTTTTACATTGCTGTGTGTGCTGACGCTAGAAGATGGTCGTTAAGGTAATGTACGCTACTGCTCGTGTTACAGTTAATCAGTATATCAGGTTTCCTTACTTTATGTTCAAAGCTGCATTGAGACAGaggacctcacacacacacacacacacacacacacacacacagccaaatcCTTGAACCTTCAGGCCTTGCACCACATTGCCAGTGTGTTTAGTGCTCAAGGCGAGACTTGTTTAGAACCCGGATATGAAAATTACAGAGTTTTTGTACGAGTGTGTCAGAGTTGATCTGGTGTAACACTGCAGCAAGTGAACAACATTGTTTTGGTGTCATGTCAATATTCTCTGTTAAATCTTCACAATCAAGTTGTCAGTGTTGCTTTGTTGTTAAGTGACAAATAAGTATGGTGCATTTATTTGTTGGTCAGCTTTCAACGTTTCTGTTCATTAAATCCTGATTTTCGTAAGCCATGTTTCTTTCCTGTGGATGTGGactcatgagtgtgtgtgtggtgtacacacacacacatggaaacCCCAGCATCTGAGGACTATTCAGTGGCCAAAAGCTGGTCGAAGCTTATTGAAGAGTCTTATCGAACAATGCGGCCTCCTGAACGCAGAAGACACCTCTGGAAATACGAACATGTCTGGACTTTGTTTTTCCATGTTGttacatttctgtgtttttcctttcagCCTTTCTTCATGCGCTTGCTTTCAGCCATGGATGCTGAGACCTGTGTTTTGCaggcagacaaaaaaaaagaaaaggaatcaagaggagtgtgtgattttttGTAGAGAACGCTTCAGTGTGTGCGCGTATACATGTTTCTCTGTGCCAATAGCCAGCAAGTGACGGCCATTTTAAGGACCTCCGCTCCTCTCCTGTTGCTGTGTTGAGACGTTTGTGGGACactgcatttgtgtgtgagatgttttcttttctgtgttcatccttccatccttctctcccactctcaccactccctctctttctttccttgctTTCCCTCCACCCCATACACACCTCTTAGAAAGAGAGGTTAAAAAACTAGTACATTCCTTTGAAGaaatgttgattaaaaaaattgcaaaatttgTTTAA

Function

GO:

id name namespace
GO:0021654 rhombomere boundary formation biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404040.2 lncRNA upstream 23119 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA upstream 23138 12770726 ~ 12772803 (+) False LOC113540557
TU74949 lncRNA upstream 437693 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 438260 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 500818 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004577946.1 lncRNA downstream 61653 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 258251 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 274442 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 337790 13199007 ~ 13199862 (+) True G63666
TU75479 lncRNA downstream 352760 13213977 ~ 13219859 (+) False tmem88b
XM_026937280.2 mRNA upstream 7716 12777177 ~ 12788225 (+) True wrap53
XM_026937160.2 mRNA upstream 28037 12742257 ~ 12767904 (+) True gigyf1a
XM_026936008.2 mRNA upstream 62463 12718253 ~ 12733478 (+) False epoa
XM_026935904.2 mRNA downstream 89852 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 119632 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 254999 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA downstream 254999 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA downstream 296231 13157448 ~ 13198549 (+) False kdm6ba
TU74787 other upstream 500818 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1098646 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2132534 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2230217 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2264413 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 557160 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 609552 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 697406 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 844359 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1394527 14255744 ~ 14269340 (+) False brms1

Expression Profile