RNA id: XM_034304097.1


Basic Information

Item Value
RNA id XM_034304097.1
length 7216
RNA type mRNA
GC content 0.45
exon number 10
gene id nlgn2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12508874 ~ 12670541 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGCATTTCGATGGTCGCAGAGTGGCTGAGAAAACACAGTGCTTTATAAAAGGCAGGACAGCCAGTGAGGTTATGTGCTAAATGTGTGTTAACTCCAAGCCCTGGAGCCTGTAGGTGGGATGCGAGCGTTGTCAAGGCGACAAGCTAGGGGGCGGGGCCTGGAGCATCATCTCAGAGAgctgtaagagagagagagagagagagagagagagagagatgcctaTGCGAGTGAGGGGAGATCGGAAACGCGCAGCATCTCCTCCCGACGCTGGAGCACTACGCCTCCCATCACCACTAGAAACATGCAGACGGATGGACAGACATGCTGACGGATTTAACAAGATGAATTCACACTGACagttttggaaagaaaaaaaaggaggttCTCGTTAAACAGTGACGAAACGCCGCGCTATTTTAAGCCCAGGAGACTCGGATCAGAGGCGCTGCGTTTGGATGAAGAGATCAGACCCGGCTATTCACTTTCTCCTTGTTTCCTGTCAGCCTCATCACACAGGCTATCTATCTCTGTAGACAGGATTCCTGACAGCAACCTCAACAAAAACAAGTGGTAGTAAAATGCTAGATGCTTGATAAAGGTTTTCAGTTCACATGAGAATATTTGGAGTTTGGCAGTGAGAAGAAAACCACAGGCGAGGGAAGTACAGACTGTCCACTCCACACAACACGACACCTAAATCAAGGATTTCTGTCATCTTCTGATCATCTCATCATCAGGACTCCCAAGCGTGATTGTCTGCGTGACCAACCCGATGAGGACAGTGCTGGGCAATGGAACGTAACAGACTTTTTGTCTTTGACCTTTGCCCCATCACAGCAACCTGCCAAGGCTGAGATCACCACTGGCAACACTTTGTTCTCGTCTTTGTTCTCCTCCCTGTCCCTTCTGTTCACCTGACCCCCTGTTCCTGTCCTCTCTGTCCATAGCATCTTGTCTACCTAAAAAAGGTCACGCCTTTTACACTCTATCCTGGCACTGTTCTAGTGGATAATCACTTCACCTACCCCCTTCTTGATTTGAAggataaaaaacagaaatgccaAAAGCAGTCATGCGCCCACCACGCTGGTGCAAGCAGGACTGGGGCTGTGCCCACAGATTGGACACTCTCAGCTGCGTTTACGTCCTGTGCGTAGCACTGTGGCTGACTCTGGGTGCGTGTCAGCGCTCCGAACCCAGCGCCAAACACCCAGTTGTCAGCACCAACTATGGAAAGCTGCGTGGACTCAAAAAGGAACTGAATAATGAGATATTGGGCCCTGTGGAGCAGTACCTGGGTGTGCCCTATGCCACACCGCCCATTGGAGACCGCCGGTTTCAGCCCCCAGAGGCACCTGGCTCGTGGCCTGAAGTGCGCAACGCTACTCAGTTCGCACCCGTGTGCCCGCAGAATCTCCACGGCGTGCTGCCTGAGATCATGCTGCCCGTGTGGTTCACTGACAGCCTGGACGTGGCTGCTACTTACATTCAGAACCAGAGCGAGGACTGCCTGTATCTGAACGTCTACGTGCCCACCGAGGATGGTccactcacaaaaaaacatgatgaatcTACAATGAACCGGCCACGAGACGAAGATATCCGTGACCGCAGGAAGAAACCTGTCATGCTGTTCATTCATGGCGGCTCATACATGGAAGGAACCGGAAACATGTTTGACGCAAGTGTGCTGGCAGCTTATGGCAACGTCATTGTGGTCACCATGAACTACAGACTGGGAGTGCTAGGGTTTCTCAGTACTGGAGATCAGTCTGCTAAAGGGAACTATGGGCTGCTGGACCAGATCCAGGCTCTGCGCTGGCTGAATGAGAATATTGGCCATTTTGGAGGTGATCCAGAGCGCATCACCATCTTTGGCTCAGGAGCTGGAGCCACTTGCATCAACCTGCTAATCCTCTCCCATCACTCTGAGGTCACTACACTCAttgtcactgctgtgtgtgtgtctccatgcTGTCACACTCTACACTCTTCCCCATTGTCAAAAAAGTGTCCATCTTCATCCCTAACAtcctcatcatcactgtcatcctCACCACACCCTGACCTGTCAGTCACAGAAGGCCTCTTCCAAAGAGCTATTGCCCAGAGCGGATCAGCCATCTCCAGCTGGTCCATCAACTATCAGCCGCTGAAGTACACCAAGATCCTGGCGCGTAAGGTCGGCTGCTCATACAGTGAGACAGCTGATCTGGTGGACTGCCTGAGGAGAAAAAGCTTCAGGGAGCTAGTGGATCAGGATATACAACCCGCACGCTATCATGTCGCCTTTGGCCCTGTGGTGGACGGAGATGTGGTGCCTGATGACCCAGAGATTCTCATGCAGCAGGGGGAGTTCCTGAATTATGACCTTTTGATTGGTGTGAACCAGGGAGAGGGGCTGAAGTTTGTGGATGATGGTGGCTCAGAAAGTGAGGAGGGAATTTCAGCTGCAGCCTTTGATTACACTATCTCCAACTTTGTGGACAACCTCTATGGATATCCTGAAGGTAAAGACATCTTGAGGGAGACCATCAAATTTATGTACACGGACTGGGCAGATCGTGATAATGGTGAAATGCGCCGTAAGACCCTGCTGGCATTATTCACAGACCACCAGTGGGTGGCTCCAGCTGTGGCCACTGCTAAGCTGCATGCAGATTACCAGTCCCCGGTGTATTTCTACACATTTTATCACCACTGCCAGACAGAGACACGGCCTGAGTGGGCAGACGCTGCACATGGGGATGAGATCCCATACGTGTTTGGTGTGCCCATGATTGGAGCAACGGACCTGTTCCCCTGCAACTTCTCCAAGAATGACGTCATGCTCAGTGCAGTGGTCATGACCTACTGGACCAACTTTGCCAAAACTGGGGATCCTAACCTGCCAGTCCCCCAGGACACCAAGTTCATCCACACAAAGCCAAACCGCTTTGAGGAGGTCATCTGGACTAAGTTCAACTCTAAAGACAAGCAGTACCTGCATATTGGCCTGAAGCCACGTATCCGCGACAACTACCGTGCCAACAAGGTGGCCTTCTGGCTGGAGCTGGTGCCTCACCTACACAACCTGCACGAGGAACTCCTGAGCTCCAGTACCACCCGCTTGCCCCCACGGCCTCCACACTGGAAGAGCCCTGATGCCCGTGCCACACGCCCACCATACCCCACCTTCCCTCCAGATCCAGATCCTGAGGGCTCAGAGAGGCCACGTTTTTCTCCGTTTCCTAGTGATGCACGTGACTACTCCACCGAATTGAGCGTCACAGTGGCAGTGGGTGCATCTCTGCTTTTCCTCAACATCCTGGCATTTGCTGCGCTCTACTACAAACGAGATCGGCGACATGAGGCGCGGCGTCACCGCCTATCCCCACAGAGTGGCGTGCCAGCTAACGACCTGGCACACAGCCAAGAGGAGGAGCTCATGTCTCTGCAGATGAAGCGCTCTGAGCAGCGTGACGTGGAGCCACTGCGACCAGCATGTCCACCGGACTACACTCTGGCATTACGGCGGGCACCAGATGATGTTCCACTTATGACtcccaacaccatcaccatgaTACCTAGCAGCATTGCAGGCATGCAGCAGATCCACGCCTTCAGCGCTTTCCCCTCCACCACTGGCCACAACAACACATTGCCTCACCAGCACTCCACCACCCGCGTATAGTACTGCCCTCTTTTCCTGTCCCTTCTCCATTCTTCTCTCTCATCCTCCCTGGTGAAGAAGTACAATGGGGCCTCCTGGTGGTCCTCTTATAGACACACATGAACAGCAAGAATGAGCTGTAAATGTTGGCATTAGAGAAACTGCTTTTTCAGATGAGACAAGGCTACAATTAGCAAGGACACATCCTTGTCCATTAATGGTGGCTTTGGGATTTCTTCCCACAATGCTCTAAGTGGAAAGGAATAGTCCATCAGGGAGAAAGTGACTGTAATGAATtgtctgatatatatatatatatatatatatatatataaatagagagagaggaagagagaatgTTGGAGTTTTCtagttttcttgttttctttgctcTTCCCTCTCTAGGCTGAAAGACTACATTTATCAGCCCTACATTTCTTCTCTCAACAGATTCCTctagtgtttttatcttttttgtctttactCCCtctattatttttgtctttattctcATTGCACTACATCTCTGTCCTCATCAAATCCTCGGAACATGCTCTGTGACTTGGTGTTATATGCAGGGGAGTCCGTTTTATACAAAACATATGTGTAGTAAGCAAATGATACACAACGACACATGGTTCTGTTCTTTCTACCAGCAATCTTGGTGCCAAGTACTATAGTGTACCCCTGCAACAAGATACAAAAAAACGTCTGataaaataacaacactgaTCTGGCAACGGCAAGAAAGTTAAAAGTGCCAGCCTGATTGCTCTCTATCATATCTTTTTGTTGTCTTATTTGTTTCCGTTTTTCATAAGCGAAATTAAGTGTCTTTCTTCTTGTATATATAAATCAGTGGCAAAGACTGACTGTTTATCTACAAGTGCAATGTTGGCCACGATAGCACTGTTTTAACAAATTACTTAACATCTCTCTTACCTGCTTTGATCTTGTCTACAACACCACTGTCTTTCTGGCCACTTGTGGTGTTACTCTGTTGTTCTTTCATATCAGTGTAGAATTATTGGTGCTATTGTTTGAGGAATGGCCACTGTAGAAGGCAGTATTTTATCTTCAGTATACTAGTGAACTATCATAGTCAGATGGAGTTGTTACACATATGATGCATGTGTGTAGCCATTTCTCAGCTTGTGAAATAGGGCTTGGAAAAAATTTACAGTGTTACGCTTGTTTTTCAGCATTCAcacttcattttctctcttatcTCTCCTTGCTTCTCCTGTTTGCACCTTTATTTCTAGAGAATGCTAATTCTGAGGATTCTGGAGGGTGTGAGTCAGTATGcttgtgtgtgggggggtgtgtgcgcgcgtgtgcatTTGTGCATGTGCAGAACAATGTGTATGAGCTGTGAGATGCATGTCAGCACCTTACAAGAACACTTCTAATTGAAGAGAAATTCCAGAAATAAGTAAAATGAGAAGGACCGCCAGAAAGACTGCAATACAAGTTGCAGACCTCTGGTGTAAAATTCGCCACATGGTTtttgcattttcctttttttactcCCTTGTTAGCTTTTTGTCAGCATTCAGGCACACCATCACACAAGCTTCTGctgagcatgtttttttttttgcatacatttGTGAATGAATTTCAGTGATCCCTAAACATCAAATTCATAACTGTGTGATGTAATGCTGCACACTCCTTAAATATGGTTACAATAAGCACAGAGAAAGGAGGGcgctaaattaaatattaatcagaTTAGAGCAGGTGGACCATCCAAGATGTCATCAATCAAGGCAGACAAAAAAGGCCTAGAAGTACAACACAATGAGGATATATCAGTCCTTTTGAGGCTtgcttagatgttttttttttttctgagtagTATTTCAATGTATAGCCTGATACCGACATTCATGAGATTAGGTATACATGTGTCCATCAGAGAAGGTAGGtctgacacacaaaaacaaagaattatAGAATAACACCTTATTTCTCCATTATTGTTTACTGCCATATCAATTTTTTGTCCTATTCTGAGTTCTGTGAGAGTGATGGGGGGAGCTTTGCACTTTTGTCTACAAGCTCATATGTGGAAGACCTTATAGACTGCTGCTGTAGCTAACTGAGACTGAAAAGCCTGAAAGCAGGCCAAAGTCTGATGCTgcacagtgctttgtaacatatGGAAATGTCCTTAGCATTGCCTGACTAGCATACTGGAGATCCTGTATGCTGGACAACAACAAGTTGGATTCAGTTCATACTGGATTCAATCTTAGAGGCACAGAAAACCATCAAGACataaataaaagacttttaCATGGAAAAACAACTGTGAATAATGATTCAGAGTTTCACTTGTTGGACCCCTGTACCCACGTGATCACTATTTGTGGTAGGAAACATGGCTAACCTTAAAGAAGCATACCAGAATGGAAGTGGACAAGAGgtgtaaacaagaaaaaacCTGACGTTTGCCTTTAATTCTCTCAGTTTTTGTATGCTGAACCACTAGAGGGTGACATTGTGAACATTGGAGACTTTCTTCTCCTGTTGAATCTCCAGGTTCTCAGAAAGCATATGCTAAGAAAAGATATTATACAGCGAAGAGGACTTAACTGTACATTTTTcagtgtaagaaaaaaaacaacaaaaatatttgtaaatattctgTTTCTTGTTTGTTCGTTGGTTTGTTTTATGAGTGAATGAAATACTTACTTTGTGAACAGGACAACAGGTACAAGTGTTAATTCAGCCACTGCAGACATCATCATATAAATCTCTCTTTCTGCACTATATTCAGTTTAAGGAATTAACGACCAACTGCAATCTTACAGGAAGGTTGTTTGCTCTTCAGAGTGAATATTCATCTATCTGACATTTTTACACTTGCGCTACTATAATTAATCAGCTATCAAACCCCTAACATGAAACTTATTCTGATTGTTCATTCAGTAATTTGTAGTCACTCTATTTTCAGATGATGAGTCACTGTGTGTAATGGAGGCTGGTATGAAGTCCTCTGCTCCTTGGGCTTCCTATATTAGCATTTGAACTAAAGAGCAGTATGGGGAATGTGTAAGATTGCCTCCACTTCattaagaaagaaaatgcatCTTACCTCTGCTTAAGTAAGCACTgggttttattttgttcatttcatttttgagaCATTTACAAAATGAGAAGCTtttctgctttcatttttaaatgcaccTACTGGCATCTGACCATATTTATGACTACCATTTGGTAAACCTACCAGCCTTGtggtttaaataatgaaaaaacaaaagaagcacATGAAATCCCCTTGGGAGAAACTCGTTTCAATGATAAGATCTGCTGTGCACCAGACCTGTCCCTGTTGTCTTGTTCTTACTTTCTTTGTTGAAAATCAGAAACCCGATAAGATGAAGAAAGTGTGTTAATAATGGACTTAAAATagatgattattaaaaaaagaaaatatataaataaggaGATGATATTTCTGTTTGATTTAGAAATTATTACACACTGTATGCTGTGACTCTGATCTGggaaacattaaatacattcataGCCCTTAA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07378 NLGN; neuroligin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74949 lncRNA upstream 150626 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 151193 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 213751 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74814 lncRNA upstream 259086 12248663 ~ 12249788 (+) True G63137
TU74720 lncRNA upstream 504651 12003990 ~ 12004223 (+) True G63061
XR_003404040.2 lncRNA downstream 98044 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA downstream 100185 12770726 ~ 12772803 (+) False LOC113540557
TU75285 lncRNA downstream 131353 12801894 ~ 12834330 (+) True G63547
XR_004577946.1 lncRNA downstream 252329 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 448927 13119468 ~ 13119677 (+) True G63685
XM_026936132.2 mRNA upstream 213741 12292491 ~ 12295133 (+) True si:dkey-112a7.4
XM_034304074.1 mRNA upstream 213741 12292743 ~ 12295133 (+) False si:dkey-112a7.4
XM_034303321.1 mRNA upstream 301999 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA upstream 301999 12199369 ~ 12206875 (+) False tifa
XM_026936972.2 mRNA upstream 301999 12199451 ~ 12206875 (+) False tifa
XM_026937058.2 mRNA downstream 42300 12712841 ~ 12716732 (+) True LOC113540507
XM_026937059.2 mRNA downstream 42301 12712842 ~ 12716732 (+) False LOC113540507
XM_026936008.2 mRNA downstream 47712 12718253 ~ 12733478 (+) False epoa
XM_026936009.2 mRNA downstream 47712 12718253 ~ 12733478 (+) False epoa
XM_026936011.2 mRNA downstream 56200 12726741 ~ 12733478 (+) True epoa
TU74787 other upstream 213751 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 811579 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1845467 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1943150 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1977346 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 747836 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 800228 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 888082 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1035035 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1585203 14255744 ~ 14269340 (+) False brms1

Expression Profile