RNA id: XM_026936996.2


Basic Information

Item Value
RNA id XM_026936996.2
length 2016
RNA type mRNA
GC content 0.47
exon number 2
gene id b3gnt5b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29500475 ~ 29513779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCACTACCTGCTAGTGTGAGTGCAGGCTTATATCGCCTGACTGAGTCTGGTGTGGGATagcgtgtgtagagtgtgtgtgtctgtgtggctgGTCATGCAAACAGTATGAAAACTGTCCAACTTGTTACAAAGCACAgtgtgtggttaaaaaaaaagagaacctGGTCTGAAAAAGAGTAGTAAAATGAGGCTTTGGCCGCTCGGCTGTCGCGTCCCTCCGCCCCCGGAGGAAGTTTTAGGTTGCTATGCTAACATCCAGTGAAGCAAACTCCTCTAAGACGAGAGGCAGAGAGGTGTGGAGGGAAATAAATCTACTGCTCGTCCTCTCAGACACCCGAAAACCCTGTCCAGTAAATCTGAGATGTTTGTAAAAGCGTTTTTTAGTGTGTTTCCGACAACAACACACCTGAAGCCGTTTTAAAAGGTCTCCATGTTGCAGTAAATTAGCAGGAGAAGCGACATGACAACAATGCTGCCAGAAGTTCCTTGAAATGGTTTCAGCCTCAGGATGGACTATAAAAGAACTTTGTGACAAACAATGTTTCGGCACAAAACATAGCCAAGGCTTATTTCACCCCCACTCTCGGACCCTCAACTGGATGTGTACAAGGGTCcagaatgtttgtatgtttcCGGCGTATCAGAAAATGCCAACTCCGACAGCTAATGATGACATGCTTTGTGTTGTCAGTGATCAAGGTGTACTGGGAAAGTCTTGACAGTAACATAGCAGATCATGTCAAGTCCTACTCTTTCCGCCTGCTCAACAGCTTGGACTTTATAAGTGCTAACCTAACGATTAGTTACAAAGAAGCACAGAAGTTTAGCAACCACCGTTACTTAATAAACCACGAGCAGAAATGTGTCAACGAAGATGTGCTACTCTTGCTGCTTGTAAAAAGCTCGCCAGAGAACTATGAAAGGAGGCAGGCCATTCGGTCGACATGGGGCAACGAGATCTACATCGAGAGGGATCTAGGTGTGACTGTGAGAGTGCTGTTTGCTCTTGGCATCCACCCTCAACCAATAGACAGAAAGAAGCTTCAGCAAAGTTTGCTTTGGGAAGACCAAATATACCAGGATCTAATTCAACAGGACTTTCTCGATACCTTTCACAACCTCACTATCAAGCTTCTCCTCCAGCTCAGCTGGACACACGCCTATTGCGACCATGCCCGCTTTCTCATGTCTGCAGATGACGACATCTTTGTCCATATGCCCAACCTGATCCGCTACCTGCAGGAGGTCAACCGGACCGGCGTCAAGGACTTTTGGGTCGGCAGGGTGCATCGAGGTGCTCCACCCATTCGTAAGAAAGACAGCAAGTACTATGTGTCTCACGAGATGTACCCCTGGCTTCTCTATCCCGATTACACCCCTGGAGCCGGTTATGTTGTCTCCAGAGACGTGGCCTCTAGAGTCTACCAAGCTTCCCTCACCTTAAACGCCTCTCTTTATATCGACGATGTCTTTATGGGCATTTGCGCGAGCGCGATAGGGATCTCGCCCCAAGACCACGTCTTCTTCTCTGGAGAGGGTAGGGCTCCTAACCACGTCTGCATCTACAACCAAATGATGACATCACATGGACATGTCAAGGACTTCCATGAACTCTGGAAACTTGCAACAGATCCCGAGGTGCAGCAGGTTTCCTCTGGACTTTTTGGAAAGCTTTACTGCACCATAACTAAAATCAGACTCCTTTGTGTATTACATGCTTTAAACACCTACCCGTGTAAAGCAGCCTTTTTATAGGGTCTGGATTGGTATGAaatcccttttttcccccctcctcTTCCTTTCCATTTTAGACCAAAGCCTTTGTGCTAGGTGGAGAtctgtatattatatgtatacaGGACTCTTTACGTCACACCCATGTggatcttccccaaactattgccgcaaagttggaagcacacagttgtatgttgtagaattacaatttcatttcactggaactaagaggctcaaacctgttccagcatgacaatgcccctgtgcacaaagcgagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86551 lncRNA upstream 199342 29299135 ~ 29301133 (+) True G73000
TU86528 lncRNA upstream 304357 29181767 ~ 29196118 (+) False fubp1
TU86462 lncRNA upstream 446257 29053486 ~ 29054218 (+) True G72917
TU86455 lncRNA upstream 566166 28933983 ~ 28934309 (+) True G72913
TU86452 lncRNA upstream 569077 28931076 ~ 28931398 (+) True G72910
TU86630 lncRNA downstream 5329 29519108 ~ 29521022 (+) True G73069
TU86649 lncRNA downstream 10519 29524298 ~ 29524836 (+) True G73088
TU86650 lncRNA downstream 12423 29526202 ~ 29526918 (+) True G73089
TU86653 lncRNA downstream 27316 29541095 ~ 29541435 (+) True G73092
TU86683 lncRNA downstream 115814 29629593 ~ 29629823 (+) True G73118
XM_026937112.2 mRNA upstream 3890 29481242 ~ 29496585 (+) True tbl1xr1b
XM_034303854.1 mRNA upstream 41180 29455551 ~ 29459295 (+) True LOC113540045
XM_026937018.2 mRNA upstream 76707 29390033 ~ 29423768 (+) True ephb3a
XM_026937345.2 mRNA upstream 143686 29341259 ~ 29356789 (+) True pls1
XM_034303967.1 mRNA downstream 20855 29534634 ~ 29540015 (+) True dcun1d1
XM_034303969.1 mRNA downstream 20975 29534754 ~ 29539598 (+) False dcun1d1
XM_034303968.1 mRNA downstream 20976 29534755 ~ 29539598 (+) False dcun1d1
XM_026936004.2 mRNA downstream 28204 29541983 ~ 29553547 (+) True ccdc39
XM_034303451.1 mRNA downstream 40236 29554015 ~ 29559125 (+) True LOC113540073
TU86406 other upstream 588371 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1879092 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1879798 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1942573 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1943827 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 106214 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1232352 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1232352 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1547951 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1837482 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile