RNA id: XM_026937014.2


Basic Information

Item Value
RNA id XM_026937014.2
length 6131
RNA type mRNA
GC content 0.43
exon number 11
gene id ripk2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29576698 ~ 29592827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAACGCAGCAATGCGCTCGgatgtgtgtgatatttttgtcgCGTAAGTGCGCACCTGCGAAAAATCCGCAAAGCTGTGATTTTAGGCAAACACACGCCTTAGAGAGGGTCACAttcacatgagtgtgtgtggccaGGAGTGTGATCgggtaacagtgtgtgtgtagaggtgttaTTTTGTAGCTGATTGTGTAAAGACAGTGTTGCGGGGTTTTTATTCGGGGGcgcgaggaggagcaggaggaggaggaggaggaggaggaagagggtgaagaagaaggagaaggagaagaaggagaagtgTTACGCAGATTCGCCTCAAAGTGTCGGTGAAGTCCTGATCTGTCCTTCCGCTCTCTTTGCCCTGGCAGTGACTCAGTGTTTGTTCTCCTGCCGGAATGCCGTTATCTCTGTGAGCGTTCAGCATGGACCAGGCTGGCTGTGTGAACCTGTGCAGTCTGACCAGCACGCTGCCGGTGATTCCGTACCGCAAACTCACCGACCTGCACTACATCAGCAAAGGCGGCTTCGGCACCGTGTTCCGGGCGCAGCACAGCGACTGGCGCACCACCGTCGCCATTAAGTGCTTAAAACTGGACTCCCCGGTCGGTGAAAGGGAAAGGAATTGCTTACTGAAAGAGGCCGAGGTGCTTCACAAGGCCAGGTTCAACCACATCATCCAGATCTTCGGCGTGTGCAACGAGCCCGAGTTCTTCTGCATCGTCACCGAATTCATGACCAATGGCTCTCTGGACGAGCTTCTGCATGAGaaaaaCATGTATCCAGTGGTGGCCTGGCCTCTCAGGCTGCGCATTCTGTATGAAATCGCTCTGGGTGTTAACTTTCTCCATAACATGACTCCTCCGCTGCTCCATCATGACCTGAAAACGCAGAACATTCTTCTGGACGGCGAGTACCACGTGAAGATAGCCGACTTTGGTTTGTCAAAATGGCGGCAGCTCTCAATTAGCAAAGGTTCTGGATCAAAGCCAGCTGAGATGGGCGGCACCGTCATCTACATGCCTCCTGAAGAGTATGAACCCAACAAGACTCGGAGAGCAGATGTCAAACAGGACATGTACAGTTATGCCATCATCATGTGGGAAGTGCTGTCTCGACGGATACCTTTCGAAGATGCTACAAACCCCATGCAGATAATGTTCAGCGTCCTGCGCGGCTCTCGGCCGGACACCGGACTGGACAGCCTGTCAGCGGACATCCCTGGTAGAGAGACGCTCATTAACCTCATGACGTGCGGCTGGACCGCTAATCCCGACGAGCGCCCCTCTTTCCTCAACTGTCTTATCGAACTGGAGCCCATGCTACGGAGGTTTGATGAAATCGATGTCCTGGAGGCAGTGCTGGAGGTCAAAAGGTCAAAATTTATGCGACCATTGAGCAGCGCTTCAACAACGACGGCGAATGTGAAAAGAACAGATAAGAGTCTGAAGGAACAAAACACTCCCTGGCCAGATACCAGCTCTACATCAGGATCAGGGTCGTGCTCCTCCCAGGACACGGATATCTCCCAACCAGGCTACCTTACCATCTCCAATCCATCTCATGCTGGACCATTGTCATCTGTCATGTCCATACCACTGGACACCCCAAAACCTTTAGTGGATCAAGGCTCTCACAACAACCTGAATCCTAATTATCAGACGGCTCAGCTCATCTCGGATTATAGCACCCCCCTCAGACCACACCCGCCTCAAAGTGAGAGCAACCTGCCCATAAACATTCACCCGCTCACCCTACAGGCACATCCACAAGATTTCCTCATGCCATCGGACAGCCAGGGCCCGGCAGCGCGATGGATCAGCTCTCGACGGGAGGAGGTTGTGCGCCAGATGACGGAGGCATGTCTAAACCAGAGCCTGGATGCGCTGCTGGCCCGCGACTTGCTCATGCGCGAGGACTACGAGCTGGTGGCCAACCAGCAGACACGCACCGCCAAAGTTCGCAAGCTTCTGGACACATGCGAGCGCCACAATGAGGAGTTTTGCCGTGTGGTGGTGCGCAAACTGCAGGACAACAAGCAGATGGGCCTGCAGCCATATCCGGACCTTACTTCCCCGACGCCTCCACCGCCCTACAGCGCCGCCAGCGCTCCACCGCTCTCCACCTCCAGCAATAACATCCGCAACATCTTCTGAGCTTTTTAGCTTCCCTTAGATCTGGACACTTGGAATAGAGACCTAAGGGATTTTCCTGCTTTGCTGCTTTTTCATCATTGGGATAAAATTTATTGGCCTTGTACTGGAGCAATTACACTCTCTCCCTGCTGTGGCTTTAGGACTGGACCACTTGTTCTTTTCATCCAGATTATTCCCAAgctttttcagtcttttctgTTGGAGTAAATGTGCGAAAGATTTCTGTCATTTGATCAAGACCAGTGACGTTGTCCTTGCCTTGGAGGGTCATTGAGCAATCCAAATTACACCATCATATCTTCTCATTTTTAGGCTGAACTCATCACTTGTGTTTATAGGACATGAGAATGTTCAATCTGTGAAGGTGACCCAGGATCAGCCAAGCGAAATCGCCAGCACTGTTTTACCACGGCTTGATGGAAACCTCTACAAAGAAACTCGTCTTCCTTTTagctcatgttttatttttacgaTGCGCATCGGTATGAAGTTTTGTGGAGTTTATACACCAGTTGGCTTTGTGATAACTGGATCTCACTTTGGTATTACATGCTGTGCTCACAAGGATGCAAGAAAATTGGTGGTTTGTTATAGGTATGTTTGCAGGTAAATGATTTTTAAGTTAAATGTACGTATAGACCCGTGTGTCGAAGCAAAGCTTGTTGTGAGTTTATAGATTTTTAGCACTGGATCATACAGCTCTGGATATAACTGACAACTGATTCCTTCACCTGATCCTCCTTAACATTGGAGTCAATAAGTAAAGCCCCACCTTCCACTTTCTCCTACATTCTATGTCAGAGTATgttgcatataaaaaaaaaaaaaattgagcatAGTTTATACATATGTGTATGGTCCTTCTTTCTTACAAATACATCCTTGTGTACGCAGCCTTCTTAGCCTGCTGAACTTCTTAAGGTTGACTGTCCATGATTGCTCACCTGAAATGGCATTCTGTATTTCCTTTTGTGCAATATTTTGGGTGGAGCCCAGAGTGGCCATTTTGGATTACGGTAGTTCACTACATATTACCCACATCGTACGGTTATATTATgatatatagtattatagtaaGGCAATGTACAATACTTCACCTGAAATAATGAACTACTACAGGAAAGGAATGCTAAATCACTAGCATGGGTTAGCATAGGTCATGGTTATGCTAaggcaggggtggacaaatcataattTATTCACTAGCCACCAGGCAAGTCAGTGCTCCAATGTGCTGCTCAGTCCCATGTTACGCTTGTCCAGCTAAAAACCTCAAGTACACCTTGCTGCAGAACCagaagtccagggggtggactgaacctgatccagctcctcctacctgggtGGAGTTAAATCAAAAGTCTGGGGATATGTGTTTCAGTTTGGATAAGTGTGTTTGTTCCGTGCTGTACAACGTTTCATAGGTTAGGGTTAGCCTTATAGGAGGCTGGACACCCCCCTGGACTTCTGGTTCTGCAGTGAGCTGTAACTAATTTAACAGTTTGACAAGTTAATTTCACACATGAGCTATGGGCATTAAGCAGGTACTTGAATCCCTTAGAGAAAAATACTTCCTAGCAACACAGACCTTGTTGTCAGAGTGTGTACACAGTGCAGCAGTTGGAGGGATTCAGAAAAAGGGTAGCCACAGCATCACGGTGCTTAGCGGCACTGAGGAATATATCAAAAATTTGCGCGTGTtatgtttaaacaaacatttctacGGTGACCTGtgagtgcaaaacacattagcaAGCCAGCAAATCTGACAACACATGATCACTAACACAAAATGGAAAGGGTCAGACCTTGTTGAACGTCCCAGAATTCCACGTTTTCACTCTGTTGTCTTGTTAGTCTAGCGAAAACGATTTAACGCAAAGTTACTTATGTGATAATTCTGAGGAGGAATTCTTTCTACTGAATAAGCCGGCTTCCTTTAGGTGTGTTAGGTGGGTTTTCAGGGTTCGCAAACTCATATTAATGTCGTGCGAAGTTGATAGCATCGAAAATAACATCATCTGATAAAAATAAACGTGAATAAAAGCATCCGTAGACTCATTTAGTCCATAGCGCATAATTCCTCTTACTATAAATTGTCCGTTTTCCTTTGCGTCAAAAACAAGCATATGATGTTCAATAAGGGCCGCCCCTTTCCACTATGAgttaatgttgatgtgtttgctgttgtgttttttgtttttcgctgATGTATCGTTTTGTCTTGCTGTCctctttattgttttgttttctgatttgcgGCTGTGGATTTTGGGTTTCCTGTTGGGTTTTCTggtttgctgttgcattttggtttgttaatgtgttttacaCTTGCCTTGCCtatcaaaatgaacattttacttTAGGAGTAGTTAATATGAAGTAGGACTTTTCTTTCGCTGATTGTTGGATGAGACAAATAAGAAAAACTCTGATGACAGTTATAATTAACATGCAGCTGTAAATTAGTGGTGGGTGATATGATAAAAATTATCATATTATAtgatacatatacatactgtagAAATGTGTATCATGATATGTAGCCAGGAAAATcgtttaaaacctttaaaaatgctttaatttgaaaaatataacaaaaaatgccaaaaaataatgtttaaaaaaaatctagattcAGAAAGGTAGGATGTATTAACCTCAAAACAGGTACTTAATGAGTgcattactattatttaaatgtttctttaaaagattttttaacgttaaagttcaaaagttaatatcatttttaaaataaaatggataaataaaaatcaaattttatcattttttaaatataaaaagatttCACGATATCtgcgatatctcagaaaagactacagtgacataatttatcacaatattgatatatCGTCGTATCGCCCAGCACTACAGTGAATGAACAATGGATAGTTTGGATTTGTAAATTTTTCCTCATTCCAGGCgagtgatttgtccaccctgtAAGCCAACAGAATACGGTATTTCTCTGAATTCCCCGACCCAGAGCATGCACGAATCATTATCAAAGCACTGAACCCTGCTACAGGGAATATTTCTGCTACTGGATCTTgagcatttattttcagtacatCTGGCACTCATCGTGTCTGTTTATTGCGACACtgtagaatgtgtttgtgtttacagcaGCGTTATTGCCGCGTGGATTTGGTCTCTATGAGCTACACTTGACCTAACGGGATCTTTTCCCTCATTATGTCAACTGGTTTTGTCGATTGTAGGGTTATAAAAGCTGCTTTTTGCACTGGGTTGCTTCTAAATGGTCACTagtgacttcttttttttttttgtactgctgATGATGGGCTTGCTGAGTTGCTTAGCTTTTTTGTTGGTTAGGTTACACTTTAAGAAAGTAACACTGGGTTTGGAATTCCATCTGCTTTGACTTGGTTCTCAATGGTTCTCATTTAGTATTTAAAGAAGAGAGTAAgtatttgattatttgcatgTTATTAAGCGATGCATAAGACAGTATCATCGGCGTATTTGCGTATTATGTTTGCATTAATATTTTGCAGAGTATTGTGCCAATTTGTAGGCGCTGATCATGAGGCGTCAGAACATCACATTGCAATTGCAATATTGTATCCTGTCTGTAGGGTGAatttaaagacaaaacaaaacaaaaaaaaactctgtgcCAAACTGAACATTGCCTTAATGATATAGATGCTAGGCATTAAATGAAGaggattatttttgtcataacagcattattcctttattttgttGTATCTCTAAAAGTGCCATCTCTTGCCTCTTGCCTTCTTTCTGTAAATCTAAATGCTATCATGAGAAACCGTGTGCACATTACAAACAATGCATAGCCAATGTAGCAATGTACAGGTGTCAGGAATGCGATCTATGTACGTGCTATAGTATGAACGTAATGAGAAACTTCCAGAGAAGTTCtgtgttattaaaatgtgtagcTCTCCTTTA

Function

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87006 lncRNA downstream 36342 29540095 ~ 29540356 (-) True G73423
TU86901 lncRNA downstream 256364 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 358540 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 361647 29213553 ~ 29215051 (-) True G73318
TU86821 lncRNA downstream 387358 29188616 ~ 29189340 (-) False G73249
TU87022 lncRNA upstream 14774 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 78360 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 118259 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 120066 29712893 ~ 29713446 (-) True G73458
TU87043 lncRNA upstream 121172 29713999 ~ 29714410 (-) True G73459
XM_026937263.2 mRNA downstream 1284 29564221 ~ 29575414 (-) True LOC113540665
XM_034303979.1 mRNA downstream 46017 29519091 ~ 29530681 (-) True eif4a2
XM_034303512.1 mRNA downstream 110678 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA downstream 111900 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA downstream 111987 29461041 ~ 29464711 (-) False kcnmb2
XM_026935978.2 mRNA upstream 37143 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 37143 29629970 ~ 29666855 (-) True LOC113539879
XM_026936973.2 mRNA upstream 88417 29681244 ~ 29692555 (-) True si:ch211-13f8.2
XM_026936229.2 mRNA upstream 100551 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XM_034303650.1 mRNA upstream 101563 29694390 ~ 29705682 (-) False si:ch211-13f8.1
XR_003404065.2 other downstream 971 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 51637 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 52011 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 52786 29523723 ~ 29523912 (-) True LOC113540698
XR_003404076.1 other downstream 53232 29523394 ~ 29523466 (-) True LOC113540702
XR_003403975.2 other upstream 131761 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 426679 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1148842 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1180636 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2274255 31867082 ~ 31870008 (-) True LOC113540068

Expression Profile