RNA id: XM_026937015.2



Basic Information


Item Value
RNA id XM_026937015.2
length 1076
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113540489
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13443794 ~ 13450823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AAAAACAGTATGTGATATGATGAGATGCTGGTGGGATGGGGAACTGGTGGAGACATGTTGCAAGGGTTTTGCGAATCTTTTCAGGTGACATGGGGTGTGTTGATGTCTGAAATTCATCACCTCCTAGCACATATAGATATACTGTTACATATCAGCTCCATCTgtttacactacacacatttcATTCCTTGATGCAGAAAGCAAGTGATTGGGTCTCGGATGGTTCTGACGTTTTATAAATGGGAGGATCACAAACTTCACAATCTCTGTTGATTATGTAAAGAGGCTCGACAATCCTTCACAGAAACGTGTTTTCTTTctcaagaaacaaaaaaaaaaaggaaaaaaagaaggaaaaaaagaaaattaggtTTCATTTTGACTCAGTGCAAGATTTGAAGAGCTGAAAGCCCACAAGCAACGACAAGTTATGGCAGTTCAACAGCAGGTTACCACAGTGGTGTCGCACACAGGATATAGTTCTGGCACATGGACCACAGGCATCTGTGACTGCTGCTCTGACATGAGCACTTGTTGTTGTGCCCTGTGGTGTTTCCCGTGTATGCAATGTCAGACTGCTTCTCAGTTTGGCTGGTGTTTCTGCATGCCCCTTCTGGACCCCTTCTGTCTGACCGTTTCCTGTTGCCTTCGCAGCAAGATGAGAGAGCGCTACAGCATTCATggCTCATGCTGTGATGACTGCTGTACTGTGTGTTTCTGCTACACCTGTGCCTGGTGCCAAATGGCACGTGAAATTAAGATTCGTGCTCGAGCTGGCACTAGTGCCACTGTGATCACTCAGCAGGTTATAGGCTAGCTGATCCTTTGCTGCTTCAAAGTTCAAATGTTAAATCTCAGCATTTACAATTTAATCACTTCAGTGCATATTGTTCACCTTTATTTCACACTGTTCACCTTAAGTTCTGATCACACAATGACAAAagtgaatataaatatacatttctgtTATATTAACCAGTCTTAATGACTTTTGAATATTGCTTTAGCTTTGCAACAATGTTTGTTCCCCTTGCAACAATTTGATAAATAAAGCATATAGCTGCTGTTAAAGCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU75685 lncRNA upstream 26353 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 55840 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 157960 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 166090 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 176760 13259391 ~ 13267034 (+) False LOC117597082
TU75682 lncRNA downstream 8539 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 53637 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 119179 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 244826 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 244826 13695649 ~ 13748072 (+) True G63973
XM_034303680.1 mRNA upstream 7198 13420533 ~ 13436596 (+) True acadvl
XM_026937145.2 mRNA upstream 26933 13399435 ~ 13416861 (+) True dvl2
XM_026935898.2 mRNA upstream 49622 13391809 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303510.1 mRNA upstream 49622 13391810 ~ 13394172 (+) True si:ch73-335l21.2
XM_026935896.2 mRNA upstream 49622 13391811 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303789.1 mRNA downstream 17729 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA downstream 17744 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA downstream 18996 13469819 ~ 13475037 (+) False LOC113539889
XM_026936951.2 mRNA downstream 35713 13486536 ~ 13500833 (+) True si:dkey-33c9.6
XM_026936560.2 mRNA downstream 82994 13533817 ~ 13553948 (+) True hdac8
TU75687 other upstream 25098 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1148671 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1746499 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2780387 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2878070 10565653 ~ 10565724 (+) True trnak-cuu_21
TU75730 other downstream 19946 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 107800 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 254753 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 804921 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1181207 14632030 ~ 14658936 (+) False zgc:194930

Expression Profile


XM_026937015.2 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
End of interactive chart.

XM_026937015.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_026937015.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.