RNA id: XM_026937016.2


Basic Information

Item Value
RNA id XM_026937016.2
length 2693
RNA type mRNA
GC content 0.42
exon number 14
gene id si:ch211-106h4.6
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23215075 ~ 23230453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTAGTCCATACAACTGGCTGTCAGTAGTCTGACCACCCCTGTTGGTGTAATCAGTAGTTGGTTGTTTGAGCTGTAGGCACAGTGCATGTGAGTAAGTGTCAGATGGAAACACTCCTGTGCTGCTGATGCCACTCGCAGCTGCAGATCTACCGGAGTTAGAGCTCCTCAAAGGTGCTGTTTCAAAGTGCAGTTTCAGGATTACTGAGCTCTCTGTGTTGGAAATGGCAACAAGATTCAACGTGTTTCTCGGACTGTTCACAGCCATTCAGATGAGGTTTACCATTGAGGAGCTGTCAAGAAGTGCAGTAACCTGTGCAGAACTTGAGGGCTTTCATGAAATGCAGAGTGCAGCAACAGGTCTGAAAatccaaaaagagaaagagaagagtggGCTGCCCTCCTCTACACAGCCCAGTCATGCTTGGGCCAGTCATATTCAGGAACACGGGCATTACCAGGAACATGGCAGGTCTGGAACTGAACGCAACCCTGAAGTTTTAACTAATAAGAACCATACAAACAGCTCTCACGTCCAGCAAGACGTAGATCATATCTACTACATTTCCAAAATCTACCAGCCCACAGATGCTGCAGGCAAGGACTTATGGGTAAATTTTAAACAGATGGACAAAGGAAAGGTTCATGGAGTCCTTTCCAACACCCACAGACAAGCTTTGACAGTGAACTTGTCCTTTGAGTTTCCTTATTATGGACATTTACTGAGAGAGATAACAGTGACTACTGGTGGTTTTCTCTACACAGGAGACGTGATCCATAAGATGCTAACAGCCACGCAGTACATAGCTCCACTTATGGCTAACTTTGACCCAAGTATTTCCCAAAATTCCACCATCATTTACTCTGATAATGGCACAGCTCTTATTGTTCAGTGGGACCATGTTTACCTCCAGGATGACCCAGATTTGGGCAGTTTCACTTTCCAGGCTTCGTTGCACAGTGATGGCAGGATCACCTTTGCTTACAAAGAGATTCCTGTTGATATCAGTAAGATTAGATCAGAGAATCACCCAGTGAAAGTTGGCCTTTCTGATGCATTTGTGGTGTTTCATAAGATTCAGCAGATTCCAGACACAGATATCCGAAGGAGAACAATATATGAGTACCATCGTGTTGAGCTGTTGAAATCCAAAATTACCAACTCCACTGTCATTGAGTTGCTGCCTCTTCCAACCTGCCTGCAGTTCTCCAGCTGTGACAGCTGTGTTACAGCTCACATCAGATTCAACTGTAGCTGGTGCAGCCGCCTACGAAGATGTTCCAGTGGCTTTGACCGAAATCGTCAGGATTGGGTTGACAGCGGTTGTTTGGATGAGAACCAGAGCTGCAGTGAAACAATCAAACCACATGCTGTAAGCACTGGGTCTACAATCAATAACACCGCAGCATCCACAGCCACAGCCCAGCCCAGCAGATATAGCAGTGTCATCAGCACTGTATCATCCACAAATACTCATCCCACCACCATCTCTGCTGAGCAAGACACAAAGATTGCACTTCCTTTGACTGAAGATAGATCCTCTGAGGCAGAGAGGACAGGCGAGCAAAGTGAAAGGCTGCAGACTGCTCTGCTTGTTAGCATCCTCCTCATCGTGCTGCTGATGGTGGCTGCAGTACTGGCTACAGTCTACATGTATCACCATCCCACCTCCAGTGCCAGCCTCTTCTTCATCGAGAGACGGCCAACACACTGGCCTGTGATGAAATTTCGGCGAGGTTCCGGCCACCCAGCCTATGCTGATGTGGAGGCTATGGGACGAGACCAAGAAGGCTTCATTTTAATAGAGCCTAAGGATAGCTTCATCATTGCAGACCGACGAGAGAGCTCAATTACAACAGACCAAAGAGACGGCTTCATTGTGCCTGACCAAAAAGAAAGATTCCTTGCTGTGGGACATCGCTGACATGCATTGAGCCCACTCTGGAAAAGAGACTGGAAAAGAAACATACCTCAGAACAGTTACTACATCTCctgtcaaatgttttttttttattgttctaaCAAATGTGGACACAAATTTATATTGATAGAATAGTGAAAATAttgatttgatattttgaaaatgaaaccaatgTTTGTTGAGTgtcaaaaaattttatttgcactacatagatttttttttattaatggaaaAAACATAAGGGAGTTCTCTTCCTTTGtgtgtatacagtcaggtccatgagtccatatttggacattgacacaatttttgtaattttgcctctgtacaccatcacagtggatttgaaatgaagcaatcaagatggattgaagtgtagactttcagctttaattcaaggggtttaacaaaaatattgcattaaccatttaggaattaaagcCTATTCTACACACTATTCTCCAGATATTTAGAGCTATAatcagcatgaaaaaaaaaacatgcaacacTGATATGATATTACATAAAGGAATGTAATACATActaaataattacacatttttattaaaaattattgtaCTAGTATATATGATTCCTGTGTGATTCCAGTAAATGTATTTCTCTAGAAGGCTCTACTTGAGGAATAAACAAGggcaacaataataaacaagGGGACAGAAATGCCCATGATTTGTTAATAATGTTCTGACAAATTGTGgaacatgtttaaataaaatagatagaCTTCAAACTTTAGATGTTCCCAACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82192 lncRNA upstream 210973 23001998 ~ 23004102 (+) True G69294
XR_003404049.2 lncRNA upstream 276334 22926810 ~ 22938741 (+) True LOC113540593
TU82061 lncRNA upstream 562628 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 687519 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 817974 22392839 ~ 22397101 (+) True G68954
TU82369 lncRNA downstream 54101 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 60957 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 100580 23331033 ~ 23331529 (+) True G69514
TU82463 lncRNA downstream 137208 23367661 ~ 23368677 (+) True G69522
TU82521 lncRNA downstream 217010 23447463 ~ 23457206 (+) True G69570
XM_034303414.1 mRNA upstream 884 23199939 ~ 23214191 (+) False si:ch211-106h4.4
XM_034303413.1 mRNA upstream 13106 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XM_034303415.1 mRNA upstream 13106 23186786 ~ 23201969 (+) False si:ch211-106h4.4
XM_026936910.2 mRNA upstream 70989 23124180 ~ 23144086 (+) True cacnb2b
XM_026937129.2 mRNA upstream 105372 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_026936338.2 mRNA downstream 43070 23273523 ~ 23276801 (+) False ackr4a
XM_034303654.1 mRNA downstream 43092 23273545 ~ 23276801 (+) True ackr4a
XM_026936337.2 mRNA downstream 43092 23273545 ~ 23276801 (+) False ackr4a
XM_026936872.2 mRNA downstream 114605 23345058 ~ 23349627 (+) True rnf182
XM_026936893.2 mRNA downstream 123516 23353969 ~ 23376185 (+) False ranbp9
XR_004578015.1 other upstream 1452774 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 88051 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 878342 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 1628573 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2477374 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 2667682 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile