RNA id: XM_026937025.2


Basic Information

Item Value
RNA id XM_026937025.2
length 2604
RNA type mRNA
GC content 0.51
exon number 13
gene id arhgap36
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13647181 ~ 13684599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTGACAAGCACGGTGCACTGCTGCACGTTAGAGGCCCATATTTTATCAAagtggaacacacacaaacgtgcACAGCGCGCCCTGCAGAGGAAAACATGCTATCACTTTACAGATACACAGCCACACAGAGGATGTTCTGATGGACTCCTAGTCTTCGATATTCCCTAGGTCAGGCATGTCTGTGGTCATGGGGTCCTTCCTCACAATGGATATCTGACCCTGGACCCTTCCAGGTGGTGGGCGCAGAAGCAAGAAAAGTGGATCTTCACCTGTTGTTTAAATGCTTAATATCAGGCTTTGCTGCTGAGGTagaatggttttatttttgggaTCTCATGGAGCCTCATCTACAGTGATGCAGCCTGAGGAGCCTGTGCGTCAGGAACTGCAGTTTTATTATGTGgGTGACCACACGTGGGCCACTATGTTGGGGCAGAGCGTGAAGCTGCACCCGGTGGCCATTCAGAGCCTGTCAGAACTGGAGCGAGCCCGGTTACGGGAGGTGGCCCTCTATCACCTGGAGGAGAGAGACCTGGACTTCAAGATCAGCATTCCCAAAGAGAATCGCAAGATGAGGAAGTCACTAAGAAGAAAGTTTGATTCCTTTTccaaagagaagaaagaaagagAAACGGCCCCCAAGGCATTTGGGATTCCTCTCTCACAGGTGATCGCTAACGATCGGGCCTATAAACAGCGACAGGATGCTCTGAAGGAGAGCCGTCGGGATTGTCTGGAGCTGGAGGCCAGCGTCATGCACTTCCGTGCTGAAAAACGGCAGCAGATTAGAAACCGGCCCCTGGTCAGCACAGCCTCAACCTCCGGCGATGCATCCTCATCGCTGCTGGAGCTCCACAGCAAGCCGCTTTCTCCAACATTCCTGGACAACAGCTCACGCAGCCACAGACGGGGAGGATTGTCAGTGGACTCCATCTCGGACCTGGTAGAAAGTCAGTCCAGGCTGCTGGAGGCGCTGCAGCTCTCTCATCCTAATGAATTGGACATCAAGAAGACGCCAGCGGGCCGCACACAGACTAAGCTGAGTCTAAACCCCATTTACAGACAGGTGCCACGTGTCATGGAGCGCTGCTgccagcacatacacacatacgGGTTGCAGACGGTGGGGATTTTCCGAGTAGGAAGCTCCAAAAAGAGAGTCCGCCAACTGCGTGAGGACTTTGACAGTGGAACAGATGTTGTACTGGATGATGAACACAGTGTTCATGACGTGGCAGCACTATTGAAGGAGTTCCTTAGGGACATGCCTGACCCATTGCTGCCCAGAGAGCTCTACTGCGCCTTTCTGCATGCTAACAATTTGTGGGGCGCTGATCAGTTGACGTACCTGCAGCAGCTGTTGTACCTGTTGCCTCCGTGTAACTGTGACACTCTGCTGAGGCTGCTGAGTTTATTACACACAGTTCAGGAGCATGCTCATGACTCCATCGGGCCTGACCAGCAGGAGATCCCAGGTAATAAGATGACAGCAGGTAACTTGGCTGTGATTTTTGGGCCCAACCTGCTGCAGAAGGAGAAAGGGTCCGAGAAAGACCTGAAACCTGAGGCGATGGGCATCGAGGACAGTGCTGCCATCATCTCAGTCACCCTGCTCTTCATCCAGCACTACAAGTATCTCTTCAtgGTTTCAGCAGAGCTCCAGCAGGAGGTGCTTATGAGTCTCATTCAGACTGATCCAGACGTCATCGACTACCTGCTACGCAGGAAACTCAGTGGCAGCAGTGTGACGGTGGAGCCAGATTTGGGACTACGCAGGGACACTCAGACGTCTCTGGACTCCGTGGGTCAGTCCAGTGATGACATGTCACCTATCGAGCCTATGTCCCCTTTGTTTGGAGACTCAGCTGGCGGAAGCTGTCTAAGCAGTGAGATTTTTTTCAACACACTACGTCTCAGCACCAACAGCAAACACTCTTCAGACACTACACCGAAGTCCATAGCCAAGATGCGTCAGTTCCATTCCCATCACAACCTGTTGAGTCTTACTCAGCCGTCCACCCAGCTCCAGCCTGATGAGCGAGAGCGGCAGGGGCACACGGGGCTGCCCAATCCAGTCGAGGGGCTGCAGTTCAAACTCCAGCCGCAGGAAGACACCTCCCAGCCCCAGAGCTTGAAAGAAAGGAGTGTGTGGGTTCGACAGGGCTCCAATGCCTCCTCCACCTCAGAAGACAGCAAGCAGCCAAGCAACTTCTGGGACTTTTTCACTGGCAAGATGATCCAGAAAGCCTTCTCTCCTAAACCTCTTCAGCGACCAGACTCTATGTGCAAAAAGTTGAGCGGGAAACAATGGCAAGGTGAACTTTTTTTAGAGATCATATAAGAATTTTTCTACcattcacagtttttttttaaactttgggAGAATTATTTTGTGTAAGAGTGGAGTGGCACAGTCAGCAGAGATGAACACAGATGGCGTAGTAGCACACTGAACCACAAAGAGGCGACAGTTACCCAAAAACCTCTCTGTCTGCTGATGGGTGAAAAGAGAATGTACGAGGCGCACCCCAAGGGCGTAATCCTATAAAAACTGTCTTTATCGATACACAAATAAAAGTATCATGCTGTTAAATCATCTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 74348 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 142462 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 179455 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 229740 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 259227 13387598 ~ 13387954 (+) True G63889
TU75783 lncRNA downstream 11050 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 11050 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 70945 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 218842 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 327499 14012098 ~ 14012315 (+) True G64102
XM_026936255.2 mRNA upstream 1197 13573634 ~ 13645984 (+) True nhsl2
XM_026936257.2 mRNA upstream 1197 13573635 ~ 13645984 (+) False nhsl2
XM_026936258.2 mRNA upstream 1197 13583818 ~ 13645984 (+) False nhsl2
XM_026936259.2 mRNA upstream 1197 13610395 ~ 13645984 (+) False nhsl2
XM_026936260.2 mRNA upstream 1197 13615615 ~ 13645984 (+) False nhsl2
XM_026936262.2 mRNA downstream 8178 13692777 ~ 13699690 (+) True rasl11a
XM_026936263.2 mRNA downstream 8178 13692777 ~ 13699690 (+) False rasl11a
XM_034303628.1 mRNA downstream 20818 13705417 ~ 13719454 (+) True gc2
XM_034303627.1 mRNA downstream 20977 13705576 ~ 13719454 (+) False gc2
XM_034303629.1 mRNA downstream 20977 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 84915 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 172144 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 228485 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1352058 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1949886 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004577999.1 other downstream 20977 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 571145 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 947431 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2338596 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2625614 16310213 ~ 16319166 (+) False LOC113539780

Expression Profile