RNA id: XR_004578085.1


Basic Information

Item Value
RNA id XR_004578085.1
length 3134
RNA type misc_RNA
GC content 0.43
exon number 12
gene id brms1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14255744 ~ 14269340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGACGGGAAGCGAGCAGCGCAAATCCTGAGGAAGTCGAAGTTGTCCTAGTTGGTAGAAATATTCAGGCGCAAATATTTCCGCTGCTGCGCGACTTGAGCACAAACTGAGGCTGAGTAAATTAAGGGCGAGTGCAGCGGCAATGCCAGCCCAGCCTGCTCCGCGTGAAGCAGAAGAGGAGATGGAGACGGAGCCTGACTCTGAGGTGCCTCACGCTAACGGAGAGacggaggaggagagggagcgGGAGGGAGGAGAGGCAGAGGAGACAGTGGAGGAGAGTGGAGAGGAGCGAGAGAGTGACCTCGAGGAGAGTGaagcagaggaagaggaggaggaagaagaggagagttcagAGAttgatgatgaagattgtgAAAGGAGGAGAATGGAGTGTCTGGATGAGATGTCTGATCTGGAGAAGCAGTTCCTGGAACTCAAAGAAAAGTTATTTCGCGAGAGGCTGGACCAGGTGAAAGTGAAGCTGGACGAGGTGCTGACAGGAAAAGCAGGAGAGTACAGAGAGCCACTGGCCACACTTCAGAAAAACATGCAGCTACGCACTCAGGTAGCAGGTGTTTACAGAGAGCTGTGCCTTCAGGTGATCAAACACAAGCATGAGTGTGAGATACAGGGGGCAAAACAACATCTGGAGAGTGAGAGGATCCTGCTGTTTGACACCATGAAGACAGAGCTTCTGGAAAAGATCCGCAGGCTGGAGGAGGACAAGCAGAGTGTGGACATCACCTCAGagTGGTGGAGTGATGAAGTGAGGATGAAGAAGTGTAAGAAGCGAAGTCACCTAAGCCACctggagaggaagaaaaagccAGCACTCGTGTCAGgaccCTACATAGTGTACATGCTGAGGGACATTGACATACTGGAAGACTGGACAGCCATCAAGAAGGCTAAAGCAGCACTAATCCCCTTGAAGAAGAAGTCagacaGTCGTCAGTTGTCAGTGCGCAGTGAAGGAGGCACTCTGTTTTATGAGGGAGAGAGATTCTCAAAGGGCAACACTGTTCTGTTGGAAGTCAATGATGAAAGCCCAGCACAggcaGTAATAACAGCAGTCAGTGCAGGGGAAGTGTGGTTCAAAAGGACAGATGGCAGCAAAACCAAAATCTACATTTCACAGCTACAGAAAGGCAAATACACAATAAGGAGAGCCtagagtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcaaccATGTGCTGCAGGAGTGTATATGGGTCAAAGGTCAGGTGTGTCTTTTTTGACatctttttcatgttcattttccaaaaaaatgacTAACATGCCAACATCATTCCAGTCGTACTTCTCTGAtgtaaaaaaagacattaaagggaaaaaagttcTAAACTGCAAAATAGTGATTCAGAATAACAGTCTACATTAgcaaaatgttaaagaaaaactaatagtcacaaaaaaagaaattaatttatgaAGAATATTCTTAAGACTACTAAAACTCCTGattctttcctttttgtctttgacccatgtacactatattaacACTGTTGTAACATCAGGACATCCTGTCAAGTACATCCTTCTGCACCAATATACTGCTTGGTAATTCCTAACAGacttacagacagacagctagtTGTCAGAGcttcatcaataaacacaatatgGCACTGGAAGGAGTGCTTCACTAACACAGAGGCTTTCCACTGAGCAGACGGCATAACGGCAGCTTCTGTTCACCAGCACACACAGCGTATGGCTCAGCAACGGAAACTGCTGAATCACTGTTCCCCCAACTGCAGGCACACTCCCACAGCTATACACCgctacacacagctacacaccaCTATGGAGAAACGCAAAACTGTAGACCAAATAGGGATCATATAGATGCTTATAGCCCAATATATGTATCTTTACCCTTACCATATCCTAGTCTAACAAACTGGATTACCTAAAGCCAAAAGTagagcattttgtgtaaacttaACCACAACATGCCCCTAACGTGGTTAAAACAATGCTCCTATAAAGAAGTACACTAAAGATTTTTCCAAAGGCCTCAACGACTGCATTCACACATTGCTTATCTACGCTAGTACAGCTGTGGTCACACTGGAAAATTGCACTTTGAGTCTCCTTGTAAAATTGGTGTGACCAAGGCGGGCTGAatggtgacaaaaaaaagttcctTATAGTGCAGTTAGCTTTTAGCCAACTTTGAAGACTGTGTCTCAACTTTGTTAATGCAATTCAACTTTACTAAAGGGGTAATAAAACAAGTCCTGTACCATCCAGGGtctattcccacctcatgcccagtgtttctgTGACAGGCTCCGGATTTAACATGagcctgaccagaataaagcatttattgcatatgaatgaagaaataaagtCCTATGTAAACACAAATCTTTGTGTTGGTTGGTAGCAAGCTGGCTAACTTGGCCAACCATTGACAGTAAAAAACCGAAAACATAGTTATACCATCAGTTCCAGCCTCCAGAAATCCTGTGTACTATGCATACTTTATAGTCAGGTCTAGAATTATGTCTAATCTCATGCCTTCCCACTGTTAAAATGAGCTCTTTGAAAATTTTAGACCTTCTGCAGTGCTATAAAAGTTCCACCCCCTTCAGAGATCAACTGCTTCACAAATGAAGCAGTGATTGATCCATGATTTGATTTCACATATAAACAGTTCACCAAAGTTAAATTTGACACAAAGTTTAAGGACTAAATTTATTTGCTTTGGAAACTAAAGTGTTGAACTCcactgaattgaaatgaatgtaATTCAAAAAGCTAGTGTGACTGGGTCTTATTACACACCCTGGTGCTATTCCCTGTTTCTATAATGACACCAGGATTGTAGATTAATAGCGCCAAGTTGGAAAATGTCGCTTTAATTACAATTGCACTTCAGAAGGAGAAGTAGATTTGTGATAGAGATTTTTGAGCTCATTTTGATAAGCCTTGAGTGCAAAGAGTATTTATATGTTTGTAAGCTGATTTGGAAACTGAGGGTGCTTATAAAActtatttaaaagtgtttaatataatcatgtatttataacaaaaatttttattaaaatctggtcttttattaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76204 lncRNA upstream 198857 14056527 ~ 14056887 (+) True G64308
TU75926 lncRNA upstream 213330 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 238075 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 242326 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 243429 14012098 ~ 14012315 (+) True G64102
TU76367 lncRNA downstream 25662 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 26930 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 410866 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 492995 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 707986 14977326 ~ 15011493 (+) True LOC117597182
XM_034303973.1 mRNA upstream 1854 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA upstream 3132 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026937054.2 mRNA upstream 104455 14092494 ~ 14151289 (+) True slc8a4b
XM_026936442.2 mRNA upstream 175708 14064494 ~ 14080036 (+) True hspa12b
XM_026936120.2 mRNA upstream 216137 14035207 ~ 14039607 (+) True nagk
XM_026936436.2 mRNA downstream 86708 14356048 ~ 14379551 (+) True LOC113540157
XM_026936433.2 mRNA downstream 307057 14576397 ~ 14622524 (+) True LOC113540153
XM_026936434.2 mRNA downstream 362720 14632060 ~ 14647239 (+) False zgc:194930
XM_034304076.1 mRNA downstream 363391 14632731 ~ 14647239 (+) False zgc:194930
XM_034304075.1 mRNA downstream 369150 14638490 ~ 14647240 (+) True zgc:194930
XR_004577999.1 other upstream 536290 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 693478 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 780707 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 837048 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1960621 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578093.1 other downstream 362690 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1753855 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2040873 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2098616 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 2491179 16760519 ~ 16760583 (+) True LOC113540740

Expression Profile