RNA id: XM_034303619.1


Basic Information

Item Value
RNA id XM_034303619.1
length 2005
RNA type mRNA
GC content 0.44
exon number 8
gene id naa40
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16736067 ~ 16745357 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTGCTGTGGACGAGGGgacagagagaacgagagagcgatagggagagagagagagagagaaagagggagggagggaggaaggaaggaaggaaaggagcGAAGGAAGAAAGAGTAGAACATAGCTGTAGACGTAATTAGTTATCGCCCTGCTGTTTGGCGCCAACCTGCCGGAGGGATAAAAGCGGGATAAACGTAGCATGCGAGCTAATATCGATTATTTATATTCCGCTGCTATGTTAAGCTAGCCGAGGCAGCTAACGCTTAGTTGTGGTACAGTAGGCTAGCGTGCTCATTAGcgtgttattattatttcggTGCATCAAACGGTAGCTGCCTGAGGACGCTGGTTTTCTAGCTTCCTAATATATTTGTTAACGTATTAACAATTAACCTTCTTCGAGGTGAACGTTTACCAGCGACAAAATGGGGAGAAAGTCAAATAGAGCGAAGGAGAAGAAGCAGAGGAGGCTTGAAGAAAGGGCAGCTATGGATGCTGTGTGCGCTAAAGTGGTTGCAGCCAATAAGCTCGAAGACCCTCTGTCGGCTTTTCCAGTGTTCAAAAAGTATGACAGAAACGGGTTAAATCTGGAGATTGAGTGCAAGAGGGTGACTGCGTTGTCTCCCATCACAGTGGAGTGGGCCTATGAGCTGACCAGAGCCAACGTACAGACACTATATGAACAGAGTGAGTGGGGATggaaggagagggagaaaaggGAGGAGATGAAGGATGAGAGAGCGTGGTATCTTCTGGCCCGTGATGCCGAATCCGCCCCTGTTGCTTTCTCTCATTTTCGATTCGATGTTGAATGTGGTGACGAGGTGTTATATTGTTACGAACTGCAGTTGGAGAGCAAGGTCAGGCGGAAAGGTCTGGGAAAGTTCCTCGTCCAGATCCTGCAGCTCATCGCCAACAGCCAAACCACTCTAGAGATCACTTGGAAGGGGTCCGCGACCACCTTTCTCAGACACTCTGACTGGCTGTTTTGGTCTGCACCTAAGTGCGATTGGTGTGTGGGGAAAACACACAAGgtAAAACTGAAGATGAGCCCTCGgcatgtgaatctggaatgatttgtaCAGGTGTTTTGAAATCTGATATTAACTGAGACTGCTTGGAAGCCCCTCCCCCTCATCTCGCATGCTTTCAACTGAACTCGCGGTCCaccttgctttctgtcaaggtaaagcGAGGATGTTCCACTTTTTGACCTAAAAATTAaatagagaaacagagaaaatgttggCTATATGGATGTTGGACAACTGatttatattgaaaatgtactgttatgtttttgtttgttttctgtgcattactgcagaatcacttataaatccaccatccagctgagtgtTCACTATTACTGCTGCTGGCAGTTCCCACAGCACAGCTAGAAATTTTGTTACGCCCTCCATTACTCTCCTTGAACCTGAAATGATGGAAATGGTTGTTTTCCTATTTTTTATACGCCATTGTGTCTAGACAATTAAAATCAGTGTTGCACAAGCCTAAACCAGAGTTTGATTCAAACAAAGTAAatgctgcatatgtgaaagcaccctttAGAAAGACTTGAAGGGACAGTTGGGCAAATTTCACAAAACGTTTTCTTCATCGGATATGTTTTGTCTATGTTTACATCTTGATAAACCCTTAAGATCTGCTATTAGTGGCAAGTGATAGTTTCTAATGGAAATAACTAAAGGACATCTGTTGATTTGCCACGTGAAATGTATGCATTAGACGAATGTCCTAAGTAGAGAGTCTGCTACTGAGTGCCATTTTGAGACACATTTTCCATTAGCTAAAATCCTACTGCAAACTGGAATATTCaagaataataatgaatcaCGCATCATGACTCAGTGTTGGGATATGCTGCTGTCAGTTTTCTGTATAATTAATACTACATCCCCCTCTTTGACTCATTTTGCTTCAGATTTAATAGAAGTCTCATACTGCTATTTGAAAGTTTTGTGACTTCCCTTTTTGCTCTCTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008080 N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77740 lncRNA upstream 6718 16723895 ~ 16729352 (+) True G65644
TU77739 lncRNA upstream 58704 16676529 ~ 16677366 (+) True G65643
TU77679 lncRNA upstream 141613 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 158333 16569687 ~ 16577737 (+) True G65580
TU77609 lncRNA upstream 221229 16514637 ~ 16514841 (+) True G65542
TU77752 lncRNA downstream 8609 16751860 ~ 16752090 (+) True G65654
XR_003403984.2 lncRNA downstream 14976 16758227 ~ 16762011 (+) False LOC113539905
TU77754 lncRNA downstream 15009 16758260 ~ 16763461 (+) False LOC113539905
TU77755 lncRNA downstream 15009 16758260 ~ 16763461 (+) False LOC113539905
TU77756 lncRNA downstream 15009 16758260 ~ 16763461 (+) True LOC113539905
XM_034303753.1 mRNA upstream 20973 16675435 ~ 16715097 (+) False mark2b
XM_026935935.2 mRNA downstream 3447 16746698 ~ 16750124 (+) True b3gat3
XM_026936987.2 mRNA downstream 8886 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA downstream 9569 16752820 ~ 16755407 (+) True sb:cb1058
XM_026937051.2 mRNA downstream 29148 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA downstream 29148 16772399 ~ 16776829 (+) False batf2
XR_003404046.2 other upstream 365386 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 416904 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 696086 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 2077134 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2466730 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 17268 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 17498 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 17730 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 18015 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 18321 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile