RNA id: XM_026937072.2


Basic Information

Item Value
RNA id XM_026937072.2
length 1604
RNA type mRNA
GC content 0.53
exon number 10
gene id otomp
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30225043 ~ 30237040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagctatgttACTTCCCACAATACTTCTGCGAGCATTTGAGAGACTCTTCTGCTCGAAGGCAAGATGGAGCAAACAGCAGGACGCTTGGTTTTGGCTTTTCTCCTGGTTGCAATGGTCAGTGGGGCCACCATCCAAAGCATCACTTGGTGCGCAATTTCCGAGATAGAGGAGCAGAAGTGTTTGGATCTGGCCGGAAACATCGCGTTACGGAACATCCGCGGGAAGCTGCAGTGTGTGCGGGGTCACAGTGCTACAGACTGCATGCAGAGGATTAAGAACGGCACAGCCGACGCTGCCTCCATGTTTCCTGACGAGATCTACACCGCCGGCATTTGTTACGGGTTAGACGTCGCGGTAGGAGAATCACACAACGGAATAGATGGCATTAATTACTACGTGGTGGCGTTGGCGCGCAGGTCCTCGGGCGACCTGTCCCTGCTGGAGATGCACGAGCGCAGTTCCTGCCACCCGGGAATCCGCACCACCGTGGGCTGGACGGTGCCGATCGGCTTCCTGGTCAACACGTCGCAGATCAGCGTGGACGAGCAGTGCAACTTCCCTCATGCGGTGGGAGATTTCTTCGGCTATAGCTGTGTCCCAGGGGCAAAAGACCCGGAGCATGACCCCAAAGGCAACAATCCCAGAAACCTTTGCGAGGCCTGCATAGGTGATGAGAACGACCGGCACATCTGTGCCAACAACCCTCGGGAACGGCACTACGGGGAAGCAGGAGCTCTCAGATGCGTGGCCGAGAACCTCGGAGACGTGGCCTTTGTGAAACACACCACTGTCTTTGACAACCTCAATGGTAAGAACCAGGAATCATGGGCTCTGGACATAGAGATGGAGGACCTGAAGCTACTGTGCCCAGATGGAGGTGAAGCGCCTCCCTCTGAACATCGCCGATGCCACCTGGCCGTGGTGCCCGCCAACGCCGTGGTGGTGCGCCTGGAGGATAAATGCCGCGTTTACAAGTTCCTGGAACGTGTTCAGAATGCGTTCGCCAATGCCACGCAGGGTTTCTCGCTCTTTAGCTCGGTGGCGTACGGACAGCCTGACGTCATGTTCAGTGACTCGACTCTGAAGCTGATGAGGGTGATGGGAACTTACCAGTCCTGGCTGGGACACAGTtacaccaccatgcttcaggCGTTCGAGTGTGAAGGCTTGTGCTGATGGGATTAAgactctctctttccctctttctcaccctctcccttcttcctctctcagaTATTCCTATTCCTATCCCTACCCACTTTGCCAAGTTCTCATTCCCAAGCTTCATGcttttcctcctctcctctttcctCCATCTGCGACTTGCCGTACACATCCCACTGTATGCGCTATTCGATCTGCGATCTCACCGAGGACGAAGGCCGATGAGGTTGCCTCATGCTGTGAAGGGATTCATTCTATTGAGCCTATACTGTGTTAAATCCATGCAATTTGATACATATCCTGGGTTAATCAGGGGGTCCACTTAGTGGAGATGTTGCCCTTGCCCTCCGTGGCTTCATTGTACCCAAAGCTTAAATCACCTGatgaatttaattacattttagagtctgggaaaaaaaaaaaagaaaaaaaaagaa

Function

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0048840 otolith development biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 32709 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 90178 30134652 ~ 30134865 (+) True G73578
TU87184 lncRNA upstream 94336 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 101793 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 106551 30118006 ~ 30118492 (+) True G73568
TU87379 lncRNA downstream 240385 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA downstream 240385 30477425 ~ 30478250 (+) False uggt1
TU87498 lncRNA downstream 244382 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 356110 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA downstream 356194 30593234 ~ 30593609 (+) False G73844
XM_026936332.2 mRNA upstream 13068 30205198 ~ 30211975 (+) True d2hgdh
XM_026937319.2 mRNA upstream 21033 30199694 ~ 30204010 (+) True znf622
XM_026937320.2 mRNA upstream 21294 30199694 ~ 30203749 (+) False znf622
XM_034303855.1 mRNA upstream 30469 30139003 ~ 30194574 (+) True zgc:110158
XM_026937105.2 mRNA upstream 115208 30097705 ~ 30109835 (+) True keap1a
XM_026937167.2 mRNA downstream 101830 30338870 ~ 30447632 (+) True hs6st1a
XM_034303971.1 mRNA downstream 217717 30454757 ~ 30478293 (+) True uggt1
XM_026936553.2 mRNA downstream 544118 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA downstream 544118 30781158 ~ 30845103 (+) False epha4a
XM_026936633.2 mRNA downstream 768383 31005423 ~ 31028876 (+) True slc25a36a
TU86682 other upstream 602006 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1312939 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2603660 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2604366 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2667141 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 509091 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 509091 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 824690 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1114221 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1532782 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile