RNA id: XM_026937088.2


Basic Information

Item Value
RNA id XM_026937088.2
length 5011
RNA type mRNA
GC content 0.51
exon number 40
gene id carmil3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31290821 ~ 31344984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatgatcaCAGGCATCGCACGCTCTTAGTTAGACCAAGGACGAGGAGACGCACGCGGGACCTCCGGCGCAGCACGCGCGCAACATGGCCGCGAAAGACAGCGCACCGGCGAGCTTTCTGAGCGTGAGCCGGGAGATGACAGACAGCATCAAGAGAGTGATTGACAAACCGTCCATCAAGTTTGCACAAGCCATCAAAGTGGAAAGCAAGAATGGGAAATCAGAAGACAGGGTTTTGGTGTTGGCGACATGGCGGCTTTACCTCATGGCTCCAAAATTACCAACCAAGGTGGAGCAAACGTTTAACTACCTGGAGATTCGTTCTATAAGCCCTCATCCAGAGAACCAGGTCGTCATAGAGACAGACAAATCCACCTACGTCTTCAGGCTACAGTCGAGTGACCACATGGATCAGCTGCTCAGCCACATCAACTTCACTCTCTTGCGCATCTTCAACAGCTCCATCTGCGTtcccTCTATCTTTCAAGCAGATGGTGAGGTTTCTGATGGGGGACAGAAATATTCTCCAAGCTCTGAAACATCAGTGGAGGCTCAGAGAGCTTGTGGTGGCTTCTCGGAGACCTACGCTGCGCTGTGTGACTACAACGGCATTAGCTGCAAAGAGGAAGTGCAGTGGGATGTGGACACTATATATCACTCCCAGGACAATAGGGAGCTTAATCTGTTGGACTTCGCTCACCTAGAGAGCAGagaCCTTGCAGTCATCGTGGCGTCGATGGCGTACAATACATGGTTCACCAAGCTCTACTGCAAAGACATGCGCTTAagctcAGAGGTAGTGGAGCAGGTCCTCCACACTGTCAGTAAGTCCAGCAGTCTGGAAGAACTCACTCTGGAGAACGTCGGCCTTAAAGCAGATTTCCCTCAGAAAATGGCTGCCGCTCTGTCAGAAAACCCGGCATCTGTGCTCCACTCCCTCAACCTGTCCCACAACACGTTCGACAGTCAAGGAGTGTCAAATCTCATCCAGCAGGTGTGTCAGCTCAGCAAAGGGCTCCGTCTGCTCAACCTCTCTAAGACCTCATTCTCTTCTAaagGTGTGAGTTCTCTGTCTCAGGCGCTGTGTTCAAGTGATGACTACTCCAACTCTCTTCTGCACCTCGACCTGAGCAAGAACCCGGGCATTCTTTCTGGGGAGGATGCTATGAATCTGTACCTGTTCTTGGCTCAGCCCAACTGCTTGGTGCATTTGGATCTCTCAGGCACAGACTGTGCAGTGGAATCATTGTTTGGCGCTTTACTCCGAGGCTGCTGTGCCGATCTCTCCTACCTGAATCTCTCAAAGAACTCCTTCTCTCAGAGgAAACTGAAAGACATGCTGCCCACCTTCCGTCAGTTCTTTACCTCCGCATTCAGCCTCAGCCATCTCAGCATGGCCTCGATGAAGATGCCCGCAGACGTGCTCAGGGCTCTGTTTCTGGGACTGTCCTCCAACCCTCACATCTCTGACCTGCACCTGGACATCAGTGGTTGCGAGCTCAGgtcagcaggagcagcagtgaTAAAGGACTTGTTTCCCCAAGTCTCCTCCATCAGTACCCTGGACATCTCAGATAACGGTTTGGATGCTGATCTTTACTCGGTCATCCCAGCCTTCTCTCGCCACCCCTCCCTCAAGCATCTGCTGCTGGGCAAGAATTTCAATGTCAAGGGCAGGTTCCTGGATGACATCCTACAAAAACTTGTGCAGTTAGTGCAAGAAGAAGAGTGTGGTTTGCAGAGTCTGTCCCTAGCCGACTCCAGACTGCGATCCAGAGGAACGGTGCTAGTGAATGCACTCGGCAGCAACACGTGTCTCAGGAAAGTGGATTTGAGCGGCAATGGTCTGGAGGACACGGGGGCCAGGATGCTGAGCAAAGCCCTGCAGATCAACACCACTCTCAGgAGTGTGACATGGGATCGGAACAATACCACAGCGGCTGGGTTTCAGGATGTAGCACGCTCTTTGGAGCATAATTTCACTCTGCAGTGCATGCCTGTACCACTGAGCGATGTTACACAGGCATACCGCAGTTCCCCTGAGAGGACGGAACAGGCAATGACAAAGATCCAGCGGGCATTGTTAAGAAACAACCAGACTCAGCGCTTTTCTCAGAAACAGGCTCTCAGACTGCATCAGGGTCTGGTGACTAGCACTGCTGAGCAGGTGATGGAGCGCCTGTGTGTGCGCGTTCAGCAGCAGGTATGTGTATTAAGAGCAGCAGGTGAGGGAGAGGAGCTCCAGGCTGCTAGACAAGTTCTGAAGGAGGCCAGGAACTCTCGAGCTCTGTACCCTTCTCTGTGTGAGCTGGCTCATGTGCTCTCCGTAGATGGGCCAGTTAGACAGAAACTGGAGTCTCTCACTGGAGAACTGGCTAAAGCAGCCGATAAAGAGCTACAAGTGATTGTGGATTCTATGGTATCTCTGTGTCGGGAACTGTGTCCCCTCTCCTCGGCTACAGCAGAGcatctttctcctcctctctcttctaTCTCGGAGCGTGTGTCCATCCCCCGTTCTGCCATCCGCACTGCGCTGATGGAGAGAGCGGCCCAGGATCTCAACCAAGCTCTAGAagaAGTAAAGATGTCTGTGGTTTCCTATCTCACCAACTCAGTAGTGGACCAGATCCTTCAAGAGCTCTATGCCACTCACAAGACACTGCTTCAGCAGGTGGCTCGAGTGAGGCGACCGGACGACAGTGCCATGATCCGACACACACTCCGGAATGCTGACGCTACGGACAGCCCTGAGGACGATTTCAGTATCAGCATTGATACAATAGCCATAAAGAAGTGCAGCTCTAGGACACGACGCATCCGGCCCGTCTCCGCCAGACTGAGTGTAGGTGATGATCCCAACTTTTCTCCTTCACCTTCAGCACCTCGTTCATCTGCTCCGCTCTCTCACGTAGCCTCTTGGGACAATTTGTCCAGCTTGCCTACCCAAGGTGCACCTCTGCGCCACATAACCCACATCAGACCCCGCCCACCGAGAAGGCATAGGCCCGGACACACCTCTCTAGATATGCATTCATCTGAGAATGGTGGAGTGAACCTGTTGGATGATGGACTTCCTGACTTCTACACCAAGAGGGTCTTACCAGACAGTCAGTTGACCTCTCATCATGTCCAGTCTCTGAAGCGGAAGAAGAGGCGCAACGTGCTGTCCATCTTTTCAGGATTCAGGAAGAACCGTTACTCTGCGTCATATCAAGAGCCGGAGCCCGAGCCGGAGCCTGCGATCCAGGGGGAAGTGTGTGGGGATGAATGTCGCACcgaCGCTGGTACGGAGAACCTGTACTCTGTGATTCATCACCCTAAGGATTTCCGGAGGAAGGAGACATCGCGAGAGGAAGCTAATGGAGACCCTGGAGATCAAAAACCTCCTCAGATCTCAGGCCGAACGTTTCACAGCATACCGCTGCTGGGGATGAGGGCAGTGAGCCCGTCCTGCGTCGCACAGAGACACTCACCTGAATACAGCGACGTGTTCGTCTCCTCGGACGTCACCGTCCCCGCAGACGGAGACAATAAAGGACAGAAAGCTCCTAAAGACAGTCAAGACGAGCCACGTGTCCAGGGTTCAAACTCATCCTCTGCTCAGCTGGAGGAGGGAGTGAGGGTGGAGCCGCAGCAGAAACCCAAGCCTCCTCCTCAGAGCAGCAAGCCGAGACTGGGGAACATGAAACAGCACCATCTGGAGGAGAACTCTAGTAATGCAGGAGAGAATGCTGAAAAGGATGCTGAAGGAGAGAAAGATGTGGTTGATGAAAAAGAGGACATCCGAAGTCAGGAAGAGCAAAAGCAAAAAGCAGAAGGACAAACTCCTCCCATCTCGGAAAAGCTAGATACTGCGAAATCACCTGCGAAATCTACTGCCAAGAATCAGGTACAGCCTCCTGCACCACCTGTCGTTGCCAAGCCTGCATCCCGATTGGTAGATTCTCCCGTCACTCAAGGTGCGGCAGAAGACTGTTCCTCAAGTGGAGTGGCCACGAAGCCTCACAGGAACCGAAAGGCCCACTCTTGCGAGGCAGGCTTTAATTCAGGCATGGAGGAAGGCAGCCCCGGCGATGTGGAGAGGTCCTCAGATCCTAAACCCCCGGTGAAAAAGCCACGACTTCCCCCAAGAAGAAACAGATCTTTTGATACTGCTGgtCAACAAAGTCCAGAGCCAAGCAACGGTGAAGCCTCGTGATcaaacagttttgttttgttttttttttattttcaggcagATGTACAAACGAGTTACAGAGAAGATGGATGGGGGTCAAACAAGAGAGTGATAATGATGAGTTGTGTGGAATGATCTTATGCTTGAATGAAATTGCATTCCCAGCTGTCTGTCAATCATgtttccacaaacacacacacacacacacacacacacacacactgcttgacTGGTGTCTTTCATATCCTTTTAAATTATTCACTCTCTTGTTTTGCATCATACATTCCATTTCAGGTGTTTCTTACTTCTGTCtgctgttcatctctctctctctctctctctccttctgtttttTCACTCATTCTCTATTTCTCCTATTTGCTTTCATTAAAGTTTAATCATTAAGCAGTATTGCTGTACCTCCTTTAAAAGGTACAATGAACAATATTTCTCTCTTTACACCTCATAAGCTGTGTATGGTGTTATTTACCTGACTGGTTTCTATTCTGTGCCAGCTAGAAAAGCAATCACGCTGGGGGGAaaatgtttggggaaaaaaagggtcACAGTGCGTTGCAGTCgtaccacactgaaatgcaatcactgtccaatcacagccctTGACAAAtcattgataaataaaaactagaAAGGGCGTTCCTTTATACGGAcgacaaaaaaatgtaaaatgatgcATATAGGACCGCTCTGATTCCAAGCACATCCTGAGtagggctgtgattggacagtgattgcatttcagcgTGACACAACTGCAACAcagtgatgaaagtgaaatgcaatgcagcAGGGAATTGCTTTCaaatcagtgt

Function

GO: NA

KEGG:

id description
K20493 LRRC16, CARMIL; leucine-rich repeat-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87974 lncRNA downstream 13800 31247090 ~ 31277021 (-) False rem2
TU87966 lncRNA downstream 15347 31236413 ~ 31275474 (-) True G74256
TU87963 lncRNA downstream 64233 31225234 ~ 31226588 (-) True G74255
TU87756 lncRNA downstream 174385 31056485 ~ 31116436 (-) True G74060
TU87738 lncRNA downstream 259441 31030389 ~ 31031380 (-) True G74047
TU88199 lncRNA upstream 222067 31567051 ~ 31650584 (-) True G74417
TU88244 lncRNA upstream 391308 31736292 ~ 31785757 (-) True G74458
TU88271 lncRNA upstream 399367 31744351 ~ 31745462 (-) True G74479
TU88242 lncRNA upstream 408137 31753121 ~ 31756304 (-) True G74457
TU88243 lncRNA upstream 408137 31753121 ~ 31756304 (-) False G74457
XM_026936925.2 mRNA downstream 13572 31247060 ~ 31277249 (-) True rem2
XM_026937106.2 mRNA downstream 515119 30773449 ~ 30775702 (-) False ccl20l
XM_034303856.1 mRNA downstream 539853 30741527 ~ 30750968 (-) True LOC113540055
XM_026937067.2 mRNA downstream 566164 30721032 ~ 30724657 (-) False LOC113540512
XM_034303333.1 mRNA upstream 8918 31353902 ~ 31356972 (-) True LOC113540523
XM_026936251.2 mRNA upstream 15663 31360647 ~ 31364271 (-) True LOC113540063
XM_026936968.2 mRNA upstream 34489 31379473 ~ 31502378 (-) False LOC113540461
XM_026936967.2 mRNA upstream 34489 31379473 ~ 31502378 (-) True LOC113540461
XM_034304039.1 mRNA upstream 34489 31379473 ~ 31469641 (-) False LOC113540461
TU87656 other downstream 515002 30773463 ~ 30775819 (-) True ccl20l
TU87613 other downstream 546995 30741669 ~ 30743826 (-) False LOC113540055
TU87233 other downstream 1268296 30019506 ~ 30022525 (-) True G73619
XR_003403975.2 other downstream 1559964 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 1715094 29564602 ~ 29575727 (-) False LOC113540665
LOC113540068 other upstream 522098 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 525534 31870518 ~ 31871874 (-) True LOC117597010
TU88351 other upstream 526175 31871159 ~ 31871639 (-) False LOC117597010
TU88350 other upstream 529325 31874309 ~ 31874827 (-) True G74547
TU88353 other upstream 535050 31880034 ~ 31880556 (-) True G74550

Expression Profile