Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026937096.2 |
| length | 1140 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 4 |
| gene id | gabarapb |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 18015129 ~ 18019079 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006914 | autophagy | biological_process |
| id | description |
|---|---|
| K08341 | GABARAP, ATG8, LC3; GABA(A) receptor-associated protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78493 | lncRNA | upstream | 22882 | 17990435 ~ 17992247 (+) | True | G66237 |
| TU78438 | lncRNA | upstream | 39770 | 17973998 ~ 17975359 (+) | True | G66186 |
| TU78405 | lncRNA | upstream | 96032 | 17904611 ~ 17919097 (+) | True | G66169 |
| TU78403 | lncRNA | upstream | 96032 | 17911594 ~ 17919097 (+) | False | G66169 |
| TU78468 | lncRNA | upstream | 138055 | 17873399 ~ 17877074 (+) | True | G66214 |
| TU78533 | lncRNA | downstream | 72509 | 18091588 ~ 18096583 (+) | True | G66263 |
| TU78778 | lncRNA | downstream | 92606 | 18111685 ~ 18111915 (+) | True | G66426 |
| TU78810 | lncRNA | downstream | 158155 | 18177234 ~ 18177642 (+) | True | G66452 |
| TU79006 | lncRNA | downstream | 362877 | 18381956 ~ 18382162 (+) | True | G66637 |
| TU79026 | lncRNA | downstream | 411483 | 18430562 ~ 18431136 (+) | True | G66654 |
| XM_026935856.2 | mRNA | upstream | 4167 | 18000158 ~ 18010962 (+) | True | ctdnep1b |
| XM_026935857.2 | mRNA | upstream | 16913 | 17992640 ~ 17998216 (+) | True | elp5 |
| XM_026936445.2 | mRNA | upstream | 46818 | 17966324 ~ 17968311 (+) | True | LOC113540162 |
| XM_026936444.2 | mRNA | upstream | 64741 | 17936846 ~ 17950388 (+) | True | tnk1 |
| XM_026937074.2 | mRNA | upstream | 115636 | 17894900 ~ 17899493 (+) | True | mpdu1b |
| XM_026936730.2 | mRNA | downstream | 1132 | 18020211 ~ 18028051 (+) | False | spata6l |
| XM_026936735.2 | mRNA | downstream | 1132 | 18020211 ~ 18026457 (+) | False | spata6l |
| XM_026936729.2 | mRNA | downstream | 1133 | 18020212 ~ 18028051 (+) | False | spata6l |
| XM_026936727.2 | mRNA | downstream | 1133 | 18020212 ~ 18028051 (+) | False | spata6l |
| XM_034304036.1 | mRNA | downstream | 1133 | 18020212 ~ 18027121 (+) | True | spata6l |
| XR_003403977.2 | other | upstream | 4167 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| trnat-agu | other | upstream | 250595 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| TU78354 | other | upstream | 395050 | 17609704 ~ 17620079 (+) | True | LOC113539940 |
| XR_003404112.1 | other | upstream | 1253254 | 16761804 ~ 16761875 (+) | True | LOC113540742 |
| XR_003404114.1 | other | upstream | 1253482 | 16761572 ~ 16761647 (+) | True | LOC113540744 |
| XR_004577948.1 | other | downstream | 94365 | 18113444 ~ 18130505 (+) | False | frem1a |
| TU78855 | other | downstream | 178233 | 18197312 ~ 18208564 (+) | True | G66492 |
| TU79253 | other | downstream | 837377 | 18856456 ~ 18858652 (+) | True | G66864 |
| trnah-gug_4 | other | downstream | 1809232 | 19828311 ~ 19828382 (+) | True | trnah-gug_4 |
| trnah-gug_5 | other | downstream | 1809740 | 19828819 ~ 19828890 (+) | True | trnah-gug_5 |
