RNA id: XM_026937099.2


Basic Information

Item Value
RNA id XM_026937099.2
length 3976
RNA type mRNA
GC content 0.50
exon number 15
gene id kirrel1a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20102481 ~ 20129464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGAAAACGAAAAGACGAAAGAGGAGGGGGCAGCACTTCTGAcgccagtgagagagagagagagagagatgcgaGGAATGTGGCGCTAATGAGAAAACAGCGCTGCTGGAACGCAACGCGCGAGCAGTcaggaaaagcagaaggaaaagaagagttggatgaggaggaagaCTGAGGAAGACTGAGGAAGATCCCCACGCAGTAAACACGCATGGAAAGGATTGTTGTTGAGTGTTATTGGCAGAGCTGTGCGGGGATTTTCTGACGCTCCCCATGCGGAGATTTGAGCTTGCGGATTCGTGTCGGCTCGGCTGAACCATGCAGAGGCTGCTGCAGCTTCTCCTGAGTCTGGCGCTCACTTCTCACACGGTGTGGATGGCCCGGTTCTCTCAGGAGCCAGCAGATCAATCGGTGGTTCTGGGCCAAAGAGTGGTCCTGTCCTGCGTGGTCTTCAATTACTCAGGCATTGTGCAGTGGACTAAGGATGGGCTGGCTTTAGGCATTGGAGAAGACCTTCGAGCTTGGCCGAGATACCGTGTGTTGCGACTGGTGGATGTGGGGCAGTACAATTTGGAGATCTCATCGGCCGAACTCTCAGATGACTCTCTCTATGAGTGCCAGGCTACAGAGGCTGCCCTGCGCTCCCGCAGAGCCAAACTCACCGTTctcattCCCCCTGATGAGCCGGTTATTGACGGCTCCCCAGAGATCCTTCTCACTGCAGGGGTTTCCTACAACTTGAGCTGCGTGACGCGTGGAGCCAAACCCCCTGCAGTTATAGAATGGCAAAAAGACGGGCTGCCTGTAGAGGGGGCAGTCAGTACAACGgAGGTGCTACCTGATAGGAAGCGAGTAACCACGCGCAGCTTCCTGCCCGTTGTCCCAgtggacacagacacaggaaagaACTTCACATGCGTGGCCACCAACCTGGCTGCGCCCTTCGGCAAACGTACCGCCGTCACCCTCAATGTGCACCATCCTCCTGTGGTGGTGTTATCCATTGAACCACGCTCTGTGCtggaaggagagagagtgacatTCACCTGCCAAGCCACTGCCAACCCCCCAGTTATGGGCTACAAATGGGCTAAGGGCGGAGTGGTCATCCAGGGtgcgagagagagtgtgtttgtcaCTAAAGCTGACCACTCTTTTTTCACCGAGCCTGTTTCTTGCCTAGTGTTCAACGCGGTGGGGAGCACCAACGTCAGCATACTAGTGGATGTACACTTTGGTCCTATCTTGGTGGTAGAGCCAAAGCCAGTGACAGTAGACATTGATTCTGATGTCACGTTGAACTGCAAGTGGGCAGGCAACCCCCCTCTCACCCTCACATGGACAAAGAAGGGGTCCAGCATGGTGCTGAGTAACAATAACCAGCTCTATTTGAAGTCAGTGAGCCAGGCTGATGCTGGCCAATATGTGTGTAAGGCCATAGTGCCCAGGATTGGAGTGGGAGAAACAGAGGTCACTCTCACTGTCAATGGTCCCCCCATTATATCCAGTGAGCCAGTCCAGTACGCagtcagaggagagagaggcgAGGTCAAGTGTTACATCGCCAGCACTCCTCCACCGGACAAGATTGTGTGGGCGTGGAAGGAGAACGTGTGGGACAAAGAGAAGGGGACTCTACCAGAACGCTACACTGTGGAACAGAGTAAGCCGTCCTCTGATGGAGGAGCAGTGCTGTCTACTCTCACCATCAACAATGTCATGGAGTCTGACTTCCAATCCACCTACAACTGCACGGCCTGGAACGCATTCGGCCCAGGAACCATGATCATCACTCTGGAAGAGACCGAAATTGTCCCAGTTGGTATCATTGCAGGCAGCACTGTAGGCTGCTCTATTCTGCTGTTGCTCTGTCTGCTGGCATTAGTCCTGTTCCTATATCGTCAACGGAAAGGAAGTCGCCGTGGGGTCACTCTTGGTAAGCCAGACATCAAGGTGgagacaataaataaagaaacccACAGCTTAGAGGAAGACTCAGCCAGCGTCTCCACAGCAAGCCGCATGGTCAAGGCTATGTACTCGCCTTTTAAAGATGACATTGATATCAAACCGGACCTGCGCAGTGACACCTTGGACACGCGTCAGGACTATGAGATCAAGGACCCAACAAATGGCTATTACAACGTGCGGGCTTCCACCCATGACGAGGGCCGTCCTGCCTCCCGCTCCATGCACTACTCTGACTATCGGACCGCCACTGCACCAGGCGGCGCTGCAACTGTTAGTGGTAGCTCAGGCACTGGAGCTACAGCAGGTCCTGGAACGCCGAGCAGCTTGGCTCCTGGGTCACGAGCTGGCTGCTATGACCCTAGACCTCCTTCCAGGCTCAGCTATGCCCAGTTCAACACCTTCAGCAGACCAAGTCAGTCTCAGCAGCCTCCGCCCAGCTCCGGGCCTCAGACAGGCGACTTTCCAGCTGAATGCAGTCTCCTAGACTCGACACCACAGTTACCATACGAGAACTACAGCTACCCATCGCACTACCCTACGTATCGTCTTGGCTTTGCTCCTCCCAGCCTCGCTCCATTAGAAAGCGGCGCAGCATATGAGATGTACAGCGTGGGGCAAAGTGTAAGCGTCGGAGGCACTGCTGCACCCCCGGAGAGTGGACTCGGGAAGTATGGTAGCTCCACGCGCTTTTCCTACACCTCGCAGCATTCCGACTATTCCCAccgacacacacagaggatgcaGACGCACGTGTGAAGGAGGAGCATAATGCCACACTGCGCTGCTCTTCCTcacttcagcacacacacttgacCACATGCTCACAAACATACACAGGAGGAAGTTGTAAAGAAAGGGAGAATGAGTGGTAGGAATCAGATCAGAAAGCACAGAAGAGAGAGTGGGAGGGAAATTGAGAGATGAGGGAATTCTCTTTTCAGCTTTTTCTGCTTATTTCCTCAGCTCGAGGAGCTGATAGCGAAAGTCACAATCAAGATGAAAAAAAGTAGCATTAATGAAGGATCTAAGATCTTCAAAATTCTGACTGTATAGGTGTGAATATCTTGGAGTTAGCATGGCCACAGACACATCTTGAGAACTGATGAAagcttctgtgtctgtctgtgacaAAAACTACATGGCAGCGGTGGTCATGGAAGACTTTTGTATGAATTCTTGTTAATGGCTTCTTCAACTCGTCTCCACACCTTTACAAGGCAAATACAAGAAAGCAATATAACAGAGATTACACCTACAGTAGACTTACAGTGGTTCAATGATGAGTCCTAAACAGTCTTACAGAATTTTATTAATTCCTCACAATCAACCATGAGCAAAGCACCAAACAAAGCACAACACTATATGACCATATATCCTTGGTTACCAAAgcattaggggtgtaacgatacggCACATCATATTCTATCATTCGATACGAGGCTCTCGATTCGATATGTCAGTACTTTCAACAGGCTGCCTAGTcttagttcagttcagttcagttttctGCTAAGCATTCTGTTTTTCATGAGCTAATACGCTAGCATACTAGCATATTAGCTCAAGGAAAGCAGCCATGGCTACCATCAACAGCAAGCAGGAACTGGAAAATTCCTACAAATCTGTAAGTCTTGTTGTTCAGGAGCACTTTGGATTCCCAGTGACTTAAAACTCTGATGACCAGTGACCTAAAGCTTCTGTGTCGGTTGGTAGAACTAGATGAAAACACGcagcaatgcacacacacacacacacatctctctgcTGATTTAGTACAGGTTACAGAAAATCACAGCAGAGTTTGGGAGCTGCAGATATGAGACCCTGCTTGGTAATGGAGAACGCAGGATTCAAAAACATGTTTGCgctacagagagctgtgtgacACTGAGTGCACAACTATCCAACAGCAgaatttgaaatttaaaaaaaaaaaaaaaactgtgcttCAGAGAAACTagagctaatgtttaattagacatttaattttattacatccTCAtg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 35317 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 35444 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 136594 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 137396 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 185313 19916600 ~ 19917169 (+) True G67595
TU80393 lncRNA downstream 120594 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 351136 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 505884 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 562799 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 562799 20692263 ~ 20693111 (+) True G68070
XM_026935895.2 mRNA upstream 3405 20091887 ~ 20099077 (+) True LOC113539830
XM_026936960.2 mRNA upstream 15177 20081770 ~ 20087305 (+) True LOC113540456
XM_026936959.2 mRNA upstream 27447 20069061 ~ 20075035 (+) True LOC113540455
XM_026937322.2 mRNA upstream 35262 19990684 ~ 20067220 (+) False dock11
XM_026935939.2 mRNA downstream 18360 20147824 ~ 20154777 (+) True fcer1g
XM_034303348.1 mRNA downstream 29848 20159312 ~ 20166249 (+) False hacd4
XM_026936479.2 mRNA downstream 29856 20159320 ~ 20166249 (+) True hacd4
XM_026936481.2 mRNA downstream 30149 20159613 ~ 20166249 (+) False hacd4
XM_034303347.1 mRNA downstream 30279 20159743 ~ 20166249 (+) False hacd4
trnar-ucu_2 other upstream 1384 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 273592 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 274100 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1243830 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1893918 18197312 ~ 18208564 (+) True G66492
TU80337 other downstream 18331 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 222950 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 890794 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1197882 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1499612 21629076 ~ 21639890 (+) True mettl4

Expression Profile