RNA id: XM_026937103.2


Basic Information

Item Value
RNA id XM_026937103.2
length 2816
RNA type mRNA
GC content 0.45
exon number 9
gene id dapk3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26597247 ~ 26608467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGAGGGGGCGGGCAGAGAGGTGCGTCATCAGCGCTCGCCGCAGAGGAGTCCGGGTGACGTCAGTGTGGAAGTGGAATGCGGCGATCATAAGGAATtgtgtgaggTCAGTAGTGAGGATCAGACGTAAGGTCAGTGAGTCATGGCTGCTTTCAGACAGGAGGATGTGGAGAAGTTCTACGAGATGGGGGAGGAGCTGGGCAGcgggCAGTTTGCTATCGTGCGTAAGTGCCGTGAGAAGAGCACAGGCGTGGAGTACGCCGCCAAGTTCATCAAGAAGCGGCGTTTATCATCGAGCAGACGAGGAGTGAGCCGTGAGGAGATCGAGCGTGAGGTGAATATCCTGCGGGAGATCCAGCACAGCAACATAATCACACTGCACGACATCTTCGAGAACAAGACAGACGTCATCCTCATCCTCGAGCTGGTGTCTGGCGGAGAGCTCTTCGACTTCCTGGCTGAGAAAGAGTCTCTGAGTGAGGAGGAGGCCACACAGTTCCTCAAGCAGATCCTGGATGGGGTGCACTACCTGCACTCCAAACACATCGCCCACTTCGACCTCAAGcCGGAGAACATCATGCTGCTGGATAAAAACGTTCCCAATCCCAGAATCAAGCTGATTGACTTCGGCATTGCACACCAGATAAAAGAAGGAAATGAGTTCAAAAATATCTTTGGAACACCAGAGTTTGTTGCTCCAGAGATTGTGAATTATGAACCTCTTGGCCTGGAGGCAGACATGTGGAGCATCGGTGTTATCACATATATTTTGTTGAGTGGAGCTTCTCCTTTTCTTGGCGAGACCAAACAGGAAACACTGACCAACATCTCAGCTGTGAATTATGACTTTGATGAGGAGTATTTCAGCAACACCAGTGAACTCGCTAAAGACTTCATACGAAGACTTCTGGTTAAAGATCCAaagaAGAGGATGACGATTCAGGACAGTCTGGAACATCCATGGATCAAGGTGATAAAGCGGCGTAACGTGCGTCAGGAGGATAACGGTGGACGTCGTGGTGAGCGGCGGCGTCTGAAGACGACTCGTCTGAAAGAGTACACCATCAAGTCCCATTCCAGCATGCCTCCCAACAACACCTACGTCAACTTCGAGCGTTTCTCCCGTGTGCTGGAGGAGATCACCGCCACCGAGGACGCTCTGCACCAGCTCGAGCGGAACCGCCGCGCCTGCCGTGATGACGTCACCGCCCTACTGTCCATCTTTGAGGAGAAAGAAAGCTGGTACAAGGAGGAGAACGAGAGCATTGGCACTGAGCTGACCCGCATCCGGTCAGAGCTGCAGCGCACTCAGAGCCAGCGCCGCCACAACCAGGAGGAAGCGCGCAATACCACGCTCGCCGCTAACGCCCTCAAACGCAAGTTTACACGCCTCGAGGGGAAGTACGACGTGCTGGCTGAGCAAGTGGCCTCCGAAGTGCGCTGGGTCGAGGAGTTGGTACGCTCCATCGCCATCAACAATGGTGAAGTGCACAGCACCGGCCTGGCATGAATGGGATCAAAAGTCCGAGTCCCCTGTCGTTAGATGTActgggctgcgtcccaaatctCACACTACTGTACTAGATGATAGCAGCTCAGACTAATGCATCATGAAAGATagtgtgcggtttgggacacacccagTGCTAAATGCTTGGTAGAAAATTGGCTAAATGTGCTGATATGAAAGGTTGATATAtagtacattttaaacaatttatcaTGGTTTACGATATATTGCAATATTGTAAcatctagggaaaaaaaaactcactctTGTCTGataaacagaattatgggattgacTTCAATCATGACGGATATTTTGAGATGTTTACAATAACATGATATGATACTGGCTGCTGAATGTTACATTATACATGCACATTCTataatattactatattttatatatatcatcAGCATGTCAGTATCAGGTGTGAAGAAGTGCAGGCTctattgtttatttctcttttttgtgtCTCTGAATCTAAATTGTCAGGTGTACAGAGTGTTATGAGGTGTCCTAAAGATGTGTTAGTGCTGTGTAATGTTTATAACCTCAGTGAAATTTTCACTGTGTGCTCAGCCGCAGGTTGAAAAATCTCGTAATACAACTAAGATAATAAACAAATCTCATGTAGAGTTAGAAATCTGCGCCTTGACTGCACATTATAGCATGAGTGTGTTAGCATGTTCTGTAGGGTTTGTTTCTAGAAGTGAGCAGAATTCCAGACTGCGAGTGTAAAACTGTGCTTTCTGCATGCTGGATTGATTCATATAAGGTGCTAAAATGGTGCTAGTAAATTAATCTGAAGAATGTGGACTCAGAGTtttgggcagtgtgtgtgttttagcgcTGGAGTGCATCgatttaaaaacacaccagATATAACCTCTTAACcacagattatttatttttgttcgcTTTACATCTCAGTGGATTTGGAGTTTTATGCTTTGCTTTGAGATGAAGCACCATGTTGCCTATGCAatacttaattttaattttttaatattttaaacttaaCCTTGACGTTCTTAACATAGGGTATTTTCCAGTGCTTTGCTGTACATCATTGTATCTTAAAGTCtggaaaatacagtaaatgtacaTGTAACGACTCTATAGTGTAAGAGTCTATTTTCCTATTCATAGCACTGTCTTGTCATTCCAGTTTTGCATGACATTCCATATAGCAGCCGACACTGTACgttaaaatgctgtttaaaagtttaaaagttatttttttttgcgaTCTGTACACTACTTTTTGTTCTGTTATTTTCAgtcaacattaaaaataaaccaagtAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08803 DAPK; death-associated protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84702 lncRNA upstream 46221 26472575 ~ 26551026 (+) True G71485
TU84695 lncRNA upstream 132933 26464011 ~ 26464314 (+) True G71482
TU84608 lncRNA upstream 302265 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 370832 26225431 ~ 26226415 (+) True LOC117597184
XR_004578086.1 lncRNA upstream 371883 26224918 ~ 26225364 (+) True LOC117597183
TU84751 lncRNA downstream 59300 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 176110 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 199595 26808057 ~ 26856605 (+) True G71557
TU84807 lncRNA downstream 264214 26872676 ~ 26881469 (+) True gng7
TU85145 lncRNA downstream 434241 27042703 ~ 27042912 (+) True G71819
XM_034303985.1 mRNA upstream 18824 26558203 ~ 26578423 (+) False arhgef18a
XM_026936989.1 mRNA downstream 1708 26610170 ~ 26612219 (+) True LOC113540476
XM_026936990.1 mRNA downstream 1708 26610170 ~ 26612219 (+) False LOC113540476
XM_026936988.1 mRNA downstream 1708 26610170 ~ 26612219 (+) False LOC113540476
XM_034304150.1 mRNA downstream 6140 26614602 ~ 26628337 (+) True si:dkey-127k13.1
XM_034303686.1 mRNA downstream 24347 26632809 ~ 26642234 (+) True ing5b
TU84616 other upstream 221468 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 233014 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 304463 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 55509 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 504686 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 880791 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 948055 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 949303 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile