RNA id: XM_026937114.2


Basic Information

Item Value
RNA id XM_026937114.2
length 2905
RNA type mRNA
GC content 0.51
exon number 17
gene id clstn2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31130107 ~ 31212333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATATAttcttattacctcaagctcactctGAAGCCTGTTCCTGCATATGCATACCCATTTTCACCCAGATCACGCTGATTGATGAGTGAATAAACACAAACCATGGATTGAGACATCCTACCATGGAGTGATCACCGAGAACATGGACACTGTCCTGTTGGACCCTCCACTAGTAGCCTTGGACAAAGATGCTCCCATCCCCTACGCAGGAGAGATTTGTGCTTTTAAGATCCATGGACAGGACACTCCATTCAAGGCAGAGGTATTAAACAAGACTTCAGGGGAAGGAGTATTGAAAGCATCTGGTCCCATTGATTGCGAGCAACAAAAGGAGTTCACCTTCATCATTCAGGCTTATGACTGTGGGGCAGACGTCTCAGGAGACAGTTGGAAAAAGAGCCACAAAGCAGTGGTCCACATCCAGGTCGAGGACGTGAATGagttctctccttttttccatGAGCCGGTGTACCGGGCCACGGTGACGGAGGGGAAGATTTATGACAGCATTGTGCAAGTGGAGGCCTGGGACCAGGATTGTTCAGCCCAGTACAGCCAGATCTGCAACTACGAGATcatcacacaaaacacaccttTTGCCATTGACCGCAATGGCAATATTCGGAACACGGAACATTTAAGTTATGACAAGCAGCAATACTACGAGATCATGGTGAGCGCATACGACTGCGGCCAAAAGAGGGCGAAAGAGAGCGTGCTTGTCCAAATCCACGTCAAACCCATGTGCAAGCCTGGCTGGCAAGGATGGAGTAAGCAAGTGGACTACGAGCCCGGTTCGGGCAGCAAGCAGCTGTTTCCCATGATGCACCTCGAGACGTGTGGCGGCCCCATGTCCTCGGTGCGAGTCACGGTAGAACTGCAGACCAGCCACATCGGGAAGGGCTGCGACAGGGAAACCTACTCTGAGAAATCGCTGCAGAAGCTCTGTGGTGCCGCTTCAGGCAGTGTGGATCTTCTCCCTGCCCCGAGTGCTTCGGCAAATTGGACAGCTTCGCTGCTGACAGACAGCGGACGAGACAGTGACCTCGTCTTCCACTTCGATGGACGGCAGGCGGCCAATATTCCAGAACTGGTGGTGCCTCAGAACCTCACTGAACAATTCACCATTGCCACATGGATGAAGCACGGCCCAAGTCCTGGACTGAGAGGCGAGAAAGAGACACTGCTATGTAACTCGGACAAGACAGAGATGAACAGACACCATTATTCACTTTATGTGCACAACTGTCGTCTGGTCTTCTTGCTGCGGAGGGACTTCACGCAGATGGACACATTCAGGCCGGCCGAGTTCCACTGGAAGCTGGAGCAGATCTGTGATAAAGAGTGGCACTACTACGTGATCAACGTGGAGTTTCCCGCTGTGACCCTTTTTGTCGATGGAGTGACCTACGACCCCTACCTAGTAACAGACGATTGGCCCATTCACCCCTCGCAGATTGACGTCCAGCTGACAGTCGGCGCTTGTTGGCAAGGAGGAGAGGTGACGACTCCGCGCTTCACGCAGTACTTCCGCGGAAGTCTCTCGGGACTCACTATCCGCCCTGGGAAGATCGAGACTCAGAAGGTCATCTCCTGTTTACAGGCCTGCAAGGAGGGTCTGGACATCAACTCCATGGAGAGTCTGGGGAAAGGCATCAagTTCCACTTCAACCCAGCCCAGTCAGTGCTAGTGATGGAAAGTGATGATCTGGAGAACATTAACACAGCCATGGCAAAGGTCTCCTACATTAACTCGAGGCAGTTCCCGACTCCAGGCCTGCGCACACTACATGTATCCGCTACCATTCAATGTTTCGGTGAGGACTCGTGTATCTCCATCCCAAACATAAAGGCAGTGGTGATGGTGCTGGTGCCCAGCGAGCCTCAGATCAGCATCACAGGCACCGAGCGAGTCACGATACCCGCAGCTGAGCTCCAAGCCTCCTTTGGGGTGGCACTGTTCAAAGAGATTCACATCATCAGCACGGTCATCAGGAGCGACGGGACCTTCGGCTTGGgtcacaGACCTGGAATTCTGGAGGTAATGCACAACCTTGATTACTGTGATGTGTTAGTCATTGGGGAGGAGCTGAATCCAGAGCACGAGAGTCTGGAGCTCCATCACAGCTCTTTACTGGGGAAACATCTAGACGCCACTAATTCCACATCCGGCATCTCCATCTATGgtgtgGACTCCATGGCAAATTACGAGCTGGCTATCCGGCAGGTGAGGTACCGCAACTGGCAACCGGCCAGCCTGTCAGAGAGAAGGTTCAGGCTCAGCTGCTCCGAGCTCAATGGCCGCTACATCAGCAACAACTTTAACctagagATACGAATAGTTCACAGCGTAGGGTCTGTGGAACATGTGAATCAAATGGCTGTCCAATCGCAGTACATGAGACCCATACATCATCCACTGGTCATCCACACCAACTCCAAATACATGTCAGataCATCTGCAGCTGCTACAGTAATGATAGTGATGTGTATCACTGCCCTGGTGGTCATCATGGTGCTGGGCATCTACCGCTTTCATGCAGTCTATCTAGAAGGtctaaaagagaaagaggatgaATGGAAGGAGCCAGAAATAGCCTTGGATGACACAACCTTCACCATTACTGTCAATCCTATGGAGAACATCGATGGCCGTCAGACTGCTGAGGATATGGAGGAGGACTATCCTGAGAAAGAGGACGATTACTTTGAAGAGGAGGATGACGATGAACTGGCTAGGAATCTGTCCAGTGCGGAGTCTGATGATAGTGAAGAAGAAGAGCACACAAAAGttgagagaggaagagtgaaGGGCAAACTAGTGTGGGACGAGTCCACTTTACCCTATTAACACCCCTGTCCAACTCATACACTCaggagacatacacacacacacacacagg

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87688 lncRNA upstream 98737 31030388 ~ 31031370 (+) True G74006
TU87694 lncRNA upstream 111633 31018111 ~ 31018474 (+) True G74011
TU87625 lncRNA upstream 357221 30772602 ~ 30772886 (+) True G73952
TU87604 lncRNA upstream 407305 30721031 ~ 30722802 (+) True G73935
TU87504 lncRNA upstream 536498 30593234 ~ 30593609 (+) False G73844
TU87857 lncRNA downstream 34757 31247090 ~ 31250757 (+) True G74158
TU87899 lncRNA downstream 143221 31355554 ~ 31356121 (+) True G74199
XR_004578070.1 lncRNA downstream 311770 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA downstream 315523 31527856 ~ 31528070 (+) True G74315
TU88025 lncRNA downstream 319120 31531453 ~ 31533223 (+) True G74309
XM_026936134.2 mRNA upstream 32178 31061737 ~ 31097929 (+) True spsb4a
XM_026936633.2 mRNA upstream 101231 31005423 ~ 31028876 (+) True slc25a36a
XM_026936553.2 mRNA upstream 285004 30781158 ~ 30845103 (+) True epha4a
XM_026936554.2 mRNA upstream 285004 30781158 ~ 30845103 (+) False epha4a
XM_034303971.1 mRNA upstream 651814 30454757 ~ 30478293 (+) True uggt1
XM_034303992.1 mRNA downstream 6595 31218928 ~ 31221020 (+) True LOC113540056
XM_026936712.2 mRNA downstream 9954 31222287 ~ 31236901 (+) True copb2
XM_026936713.2 mRNA downstream 9954 31222287 ~ 31236901 (+) False copb2
XM_034303408.1 mRNA downstream 27235 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936980.2 mRNA downstream 138868 31351201 ~ 31353130 (+) True c4h22orf39
TU87706 other upstream 32219 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 362975 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 362975 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1507070 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 2218003 28874356 ~ 28912104 (+) True G72873
TU87898 other downstream 138928 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 557489 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 733715 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 746689 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 746709 31959042 ~ 32330845 (+) False LOC117597173

Expression Profile