RNA id: XR_003404039.2


Basic Information

Item Value
RNA id XR_003404039.2
length 3783
RNA type misc_RNA
GC content 0.44
exon number 17
gene id prkag2b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28016064 ~ 28041785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGTTTTAAGGAACTGGAGTGGCTCCATTTTAGTCACGCTTCCGTAAGTGCAGCTCCTCACACAGCTGTTTGTCAGAACTTTCTGCACGCGCTTTACTCACTTTACAGAGTGAAAGAAGGAGCGTGAgaaggagagcgagagagagagaaggagagagagagagagtgagagagaaggagggaaaaTGGGCAGCACGGCGGCGGACGCGAAGGAGCGCGACTCCTCCAGGAAGAGCCCCAAGAAGAAGCGCGCGCTGCGGCTCCACATGCCCGATCTGACTTCCTACACGTCTCCTTATTTGGACGGAGAAAAAGACAAATCCAGTAAAGCTGGAACACCGAAGGTGGAAGAGTCCATCTCATCAAATACATCTAAAGGTTTTTCACTGAGATCTTCACTCCCTCAGCCCTCGAGCCCCATATCAGCCCCGCTCCGCTCCCGGACATCTCCCAATTCCCCTAAAACCATCTTCCCCTACCACCAGGACTCGCCTCCTAAATCCCCCCACCGTCTCAGCTTCAGTGGTATCTTCCGCTCGCCATCTAATCCCTCCAGCATCAAGATCTTCTCCAGATCCCGGAAAGCATCTGTCCCACTGTCTCCGCCCACCACGCCCACTCACAGCTCCAATCCTCCGCTTTTCTCACCGGATGAGAGACGACTGCGCTCGCTCTCGTCTCCACCTGATACAGGACTTCAGCGCTTCAGTCTGGCTTCAGCAAGCTCTGCCTCCTCAAGCCCCAGTCCTATCAGATATAGCCCCTCCCCTTTACACATCAGGTCCGCCTCTCGTCCAGTGTACGGTTCAGTTGAAGGCATGCTGGAGAAACTGGACCTCAGTGATGATGAGCCGGGCTGTGATATTTACACACGCTTTATGAAGTGCCACCGTTGCTATGACCTCATCCCCACCAGCTCAAAGCTAGTGGTCTTCGATACAACACTACAgGTCAAGAAAGCGTTCTTCGCTTTGGTCGCTAATGGAGTGAGAGCTGCTCCACTGTGGGACACCAAACAGCAAAGCTTCGtggGAATGCTGACCATCACAGACTTCATCAAAATTCTACACAGATACTACAAGTCACCTCTCGTGCAGATATACGAGCTGGAGGAGCACAAGATTGAGACGTGGCGAGAACTCTACTTGCAGGAAACGTTCAAGCCCTTGGTGAACATTTCACCTAGCGCAAGcatATTCGAAGCGGTTTACTCCCTCATCAAAAATAAGATCCACCGGTTGCCCGTGATCGACCCGATCTCAGGGAACGTCCTCTACATCCTCACACACAAGAGGATCCTCAAGTTCCTGCAGCTGTTTGTGTGTGAGATGCCCAAGCCGGCCTTCATGAAGCAATCACTGAGCGAGCTCGGCATCGGCACGTACGACAACATCGCCTTCATCCAGCCGGACACGCCCATTATCAAGGCGCTGAGTGTGTTTGTAGACAAGAGAGTGTCAGCGCTGCCCGTCGTCGACAACACCGGAAAAGTCGTGGATATTTATTCCAAATTTGATGTCATAAACCTGGCAGCGGAGAAAACATACAACAACCTGGACATGAGTGTGACGGAGGCGCTGAAACACCGCTCGCAGTACTTCGAGGGAGTGATGAAGTGCAGGCGACACGAGACCCTGGAGACCATCGTGGACAGGATCGTTAAGGCTGAGGTGCACaggttggtggtggtggatgAAAACTCCAACATCGAGGGCATCATCTCTCTATCAGACATCCTCCAGGCTCTAGTTCTCTCTCCTGCAGGTTTAAGCAGAAAAGAGGCTAAAACGGAAACACAAGCCACAGCGAACACGTAGCGAGCGTTACGTGACTTCACTCGAGAGTCTGAGAGAGACGTGGCTTTGACACGCGTTGCTGCTCCGTTTCACCATTTCTAAGGACAGAAATGAGTTGCGCACTACAGCGAGATCATCTCGTATGCTACATGGCCGAGTCGTCATGCTCGTCTCAGGAGGAAACCTGCCGAAATTTAAGGTGGCAACTTTAATGAACGTTGTTGACCTCTtaagctgctttcacactttttttttgtacacaaacAGGCTAACTAGATAACCTGTCGATCTAATCTTTGTTGCAACGCTCTCACTGTtgcggcctgggttcgattcccagccactAGGGTTGCAGAAGACAGTGCActccagtgccggtcccaagcccagataaaaattggagagggttgtgtcaggaagggcatctggtgtaaaatcaaatatgcggaccaatgatccaccaTGGCGACCCccaacgggagcagctgaagaaaaaaaaaattccgaCATCGTGTTCCAGACTCTGttgtgaaagcagccttaaaAGTCATAAAAGGAAGGCAGTGGAAGTTTTGCTTGGAGGTGGGGTTAACACAACTGCAAGCCACACAACTTAAGTGGCCAATAAATGTCTTTCTGAGAGTTTTGCTAAAATCCGCTGTGCCTTTAAAGTAAAAAGACAACTGAATGTACGAAATCCTTTATCTCGCTattaggcatgtgctgataatcagatGATATGATATACCGTGATGATCAACGTGCACAATACTGTTATAGTGGacactttaaaatgtaatcCCGTGATTCTGTTCACCAGGTGAGTTTTATAGACATTTGAAACAtccctgctggaaaaaaaaatattacaatccATTAGGAAACTCTCTAATGGTTTCCAGTGCATGATAGGAATGAGCTTAATGGTTTCCATCATACTCCTCAAGATTTCCTTTAGGGATTTTCTGGTTGCTATTAAACATCCCCAGAACCCAAGCGCTGTATTTCATGGTCTTGATGTGTACCACAAACCTTTAGAAACAACACATTCCATTAAACGACCATTACAGGCCATCAGAAATACATTAAAGCTGACTCACCATTGGAAATCTATAatgaattttattcttttttttttttagccaaagCTCTGATTTGAGGTTGTTTAGGTTGAATAATTCAGATGAATAAAGTTTATAGTATATAAACATAGATTTCTTTAATACAGTATTGTGATTCCACCATAAACTGTGATAAAATTTTAAGTGATTATTGTAATATGGAGGTTTCATAAGTTTCGTGTCCACATTTTTTGCTAtgactatatataaaaaagctttatttttttatactctgattgttttttattttcacattgtaTTTTTAGTTCTTCCTAAAAttgtcctaattttttttttccccaaaaaaatagaaatatttttttataaatgaatcaaataagaaaagtaaaaataaataataagaaaacaaataataaaagtctatctcacccaaaatcttttccgTCAAATGAAGACATACACAAATCTTCATAAACTCACTTTAAGCCACATGGTTAAGGCTCCGTAACCCCGTTTTCTAAATAAAACCGCAGTGAAAGGTCACATTTACAAATGAgcaatatttacagaaaagatttcCAGTGAGAAAGACTTCTTTTCCATCCTAGCTGTGTTAGCCTTGACTACATCTGCATTAAAGGGGAAATGgtgtagattttattttttgatatatttcttttaaaaggaACTCTGCTGTTTTGCGCATGTGAAAtagatacatactgtatgtagatTTATGCAGACGTTAAGGTTTTTTAATGATGTCTTTGGTTTCTGGTGAAACGGTGAGAATGAGaaacagaaatgttcatttattcacatGAACAATGACACTAATGTCagaatgtaaatgttattttttttcaatgacaTACAACTTCAAATACACGCACACTGccttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86047 lncRNA downstream 3260 28011684 ~ 28012804 (-) True G72604
XR_004578040.1 lncRNA downstream 30208 27977078 ~ 27985856 (-) False LOC117597146
TU86051 lncRNA downstream 35728 27974470 ~ 27980336 (-) True LOC117597146
TU85953 lncRNA downstream 45269 27569244 ~ 27970795 (-) False G72517
TU85956 lncRNA downstream 45269 27879538 ~ 27970795 (-) True G72517
TU86109 lncRNA upstream 25797 28067582 ~ 28068084 (-) True G72652
TU86108 lncRNA upstream 26707 28068492 ~ 28069277 (-) True G72651
TU86122 lncRNA upstream 39759 28081544 ~ 28111472 (-) False G72658
TU86124 lncRNA upstream 39759 28081544 ~ 28111472 (-) False G72658
TU86126 lncRNA upstream 39759 28081544 ~ 28111472 (-) False G72658
XM_026936536.2 mRNA downstream 176967 27704281 ~ 27839097 (-) False dpp6b
XM_026936534.2 mRNA downstream 201796 27704281 ~ 27814268 (-) True dpp6b
XM_026936537.2 mRNA downstream 224393 27704281 ~ 27791671 (-) False dpp6b
XM_026936535.2 mRNA downstream 240194 27704281 ~ 27775870 (-) False dpp6b
XM_026936538.2 mRNA downstream 240257 27704281 ~ 27775807 (-) False dpp6b
XM_026935893.2 mRNA upstream 14927 28056712 ~ 28064529 (-) True cpdp
XM_026936704.2 mRNA upstream 33831 28075616 ~ 28093936 (-) True tsc22d2
XM_026936705.2 mRNA upstream 45626 28087411 ~ 28093937 (-) False tsc22d2
XM_026936392.2 mRNA upstream 75307 28117092 ~ 28122103 (-) True ahsg2
XM_034303980.1 mRNA upstream 82297 28124082 ~ 28140907 (-) False LOC113540134
trnat-ugu_9 other downstream 391256 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 394936 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 460078 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 583386 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 619841 27396151 ~ 27396223 (-) True trnat-ugu_4
trnas-uga_1 other upstream 194401 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 194939 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 606539 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 831793 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 831795 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile