RNA id: XR_003404041.2


Basic Information

Item Value
RNA id XR_003404041.2
length 2111
RNA type misc_RNA
GC content 0.50
exon number 18
gene id acox3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16054528 ~ 16071692 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAACATTACTACATTACTGAACATTACAGAACACAACCGAAGTAGAAGACGCAGATTCACAGCAAGCTTGGGCCCAAGAAAATGGATTTGTCTAAAGAATTCCCAGAGCTTCCCAGTGGTCCTTTAGATGTATACAGAAAAAGGGCATCCTTCAACTGGAAGGAAATGCTGAGGgtcctggagggtgaggaaatAATTGCTTTCAagCAGCAAATTTTCCACACCCTAGAGAACGACCCGCTCTTTGCCAGGCAGCCGGGTGAGGATGTCTCGGTGGAACGGAGGAGAGAGCTCACTTTTCGCCGCTGCAAACAGCTGTTTAAGTACAACTTCCTGACCCAGGATGAGATGATGCAGAATCCATGGAAGGTGACGGTCCTCAACGACTGCCTGGGCATGTACGACTGGTCCTTAGGGGCCAAGTTCTTCCTCAACAAAGGGatgTTTGCACGTACTGTGGCTAGCTCTGGATCTCAGAGGCACTTCAAATTCTTGCAGGATACTGAAGATATGATGATATATGGATGTTTTGCGCTGACAGAACTGAGCCACGGCAGCAACACAAGGCTCATGAGAACAACAGCTTCATATGACCCCAGCAGCCAGGAGTTTGTAATAAACTCCCCAGACTTCGAGGCAGCAAAATTCTGGGTTGGAAACCTAGGGAAAACTGCCACCCATGCTGTTGTGTTTGCCCAGCTTTACACACCTGATGGAGTTTGTCACGGCCTGCACTCATTTGTGGTTCAGGTTAGAGATCCCAAAACGTTACTAGCAATGCCAGGAGTAATGGTTGGAGACATGGGAAAGAAATTGGGCCAAAACGGACTAGACAACGGTTTTGCAGTTTTCCACAATGTGAGGATCCCTCGGGAAAATCTACTCAACAAAACTGGAGATGTGACGCCTGACGGACAATACGTGACTCCTTTCAAGgaCCCTAATAAACGCTTTGGGGCCTCACTGGGTGCCTTGTCTGGAGGAAGAGTGTCCATAACGAGAATGGCAGTGGTAAATCTGAAGTTGGCCTTGACGATCGCTGTGCGTTTCTCAGCTACACGACGCCAGTTTGGGCCTAAAGATGATGAAGAGATCCCAGTACTGGAGTACCAGCTACAGCAATGGCGACTTATACCATATGTGGCAGCGGTCTATGCATTGGACCTGTTCTCCAAATCCTTTTACATGAACTTTGTGGAGTTTCAAATTGGTCTCTTGATGAAGGACAGCAGTGACAGACAGGCTGAGCTAGGTAGAGAGATTCATGCCATGTCGTGCTCCAGTAAGCCTCTAGGTTCATGGACGGCTCAGCGGGGCATTCAGGAATGCCGTGAAGCCTGTGGAGGACATGGATACCTGGCCATGAACCGCCTCGGAGACATCCGTGATGACAATGACCCGAACTGCACATATGAGGGGGACAACAACGTCCTTCTGCAACAAACTAGCAATTACCTGCTTAGCCTGCTCCAGCACCAGCAGCAAGGTAAAGGAAGGATTGAGTCTCCTCTGGAGACAGTGAACTTCCTGGATGACTGGAAAAGAATTCTGGAAAGCAGGTTCACAGCTGCCTCAGGAGAGGAGTGCATGGACTCAGCAGTGCCTCTGGCAGCATATAAGTGGCTGGTATGTTTCTTGCTGGGGGAGAGTCAGAGGAAGCTGAGCGAGCAGAGAGCTCTGGGGATGGGAGACTTTGAGGCACGCAACAACAGCCAGGTGTATTACTGTCGCTCATTGGCAATAGCCTACATTGAGCACACAGTTCTGCAGCGCTTCCATGATGTGACTCGGGATGACCAAACTCCACCAGGTGTCAGATCAGTTCTGAGGAGGCTGTGTGCTCTCTACGGGCTCTGGACCCTCACCAACCACATGGCCATTCTCTACCAAGGCAGCTCAAAGATGATGCTGTGGCTTTGGTTGACGTAATCGCTCCTCCTGACTTTATTCTGAACTCACCCATTGGCAACGCTGATGGTGAGCTCTATAAGAATTTGTGGGCCGCTGTCATGCAGGGGAAGAATGTTCTGGAACGTCCATCTTGGTGGGCAGAGTTCTGCTCTGACAAGCCAGTATTGGGATCCCTCCGAGCCAAGCTCTAGTGTACAGA

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0003997 acyl-CoA oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77227 lncRNA downstream 63506 15989549 ~ 15991516 (-) True smim20
TU77256 lncRNA downstream 72749 15981736 ~ 15982273 (-) True G65267
TU77240 lncRNA downstream 94655 15906094 ~ 15960367 (-) True G65253
TU77249 lncRNA downstream 129861 15924454 ~ 15925161 (-) True G65260
TU76907 lncRNA downstream 853477 15201298 ~ 15201545 (-) True G64964
XR_003404045.2 lncRNA upstream 121400 16193092 ~ 16196596 (-) True LOC113540579
TU77434 lncRNA upstream 121400 16193092 ~ 16196466 (-) False LOC113540579
TU77449 lncRNA upstream 184259 16255951 ~ 16260298 (-) True G65416
TU77455 lncRNA upstream 191233 16262925 ~ 16264165 (-) True G65422
TU77456 lncRNA upstream 195544 16267236 ~ 16267546 (-) True G65423
XM_026936293.2 mRNA downstream 24106 16028179 ~ 16030916 (-) True LOC113540081
XM_026936292.2 mRNA downstream 24167 16028179 ~ 16030855 (-) False LOC113540081
XM_026936294.2 mRNA downstream 24168 16028179 ~ 16030854 (-) False LOC113540081
XM_026936547.2 mRNA downstream 37130 16002159 ~ 16017892 (-) False tdrd7b
XM_026936544.2 mRNA downstream 37130 16002159 ~ 16017892 (-) False tdrd7b
XM_026937226.2 mRNA upstream 2095 16073787 ~ 16085506 (-) True man2b2
XM_026936834.2 mRNA upstream 21231 16092923 ~ 16098115 (-) False LOC113540382
XM_026936835.2 mRNA upstream 21231 16092923 ~ 16098058 (-) True LOC113540382
XM_026936353.2 mRNA upstream 48690 16120382 ~ 16125010 (-) True oxa1l
XM_034303465.1 mRNA upstream 69108 16140800 ~ 16141971 (-) True zgc:194655
XR_004577994.1 other downstream 63137 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 150667 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 179124 15875827 ~ 15875898 (-) True trnap-ugg_2
trnae-cuc_13 other downstream 1320295 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 1811341 14232809 ~ 14243681 (-) True G64436
TU77497 other upstream 347618 16419310 ~ 16423164 (-) True tnfsf12
TU77801 other upstream 532416 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 1328902 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 1367801 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 1522757 17594449 ~ 17634868 (-) True G66281

Expression Profile