RNA id: XM_026937127.2


Basic Information

Item Value
RNA id XM_026937127.2
length 1566
RNA type mRNA
GC content 0.49
exon number 2
gene id cth1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20567906 ~ 20570053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACTCAGGCTTCAGTACGTGTGACTTGCCTTGTTCAAGGTGCAAGCCTCGTCTTTCTATTTCTCATTTATGCCATAATcagctttttttccttctctttttcctccccTGTTCTTTTTGGTTGTTCTTTGGAAGCCGTCGTCAAGAAGGTGTACTTTTTAAAGGGAAACAAAAGCATATTGTGGAGACGCTGCTGTATTTATTCAGAAAGCTTCATAACGCACAATGATGTTTGAGACCAGCCAAGATGACCTGCTGCTGTTTCCCTCAGAGGGTAGTGATGAAGCCTTTTTCCCAGCAGAGAGCTTGGCTAGTGGGGGTCAGTCCCTGGCTGAGGCCTTGCTTCCTTTAGTTGagtctccttctcctcctcttaaCCCCTGGCTCTGCTCCACCCGCTATAAGACTGAGCTGTGCAGCCGCTATGCTGAGAGTGGTACTTGCAAGTATGCGGAGCGTTGCCAGTTTGCTCATGGCCTGCATGACCTCCATGTGCCCTCCCGCCATCCCAAGTACAAGACGGAGCTGTGCCGCTCCTTCCACACAGCTGGCTACTGCATGTATGGAAGCCGCTGCCTCTTTGTGCACAGCTTGAAGGAGCAAAGGCCGGTTCGGCACAGGCGTCGCAACGTGCCCTGCCGCACGTATCGCGCATTTGGTGTTTGCCCCTTTGGCACACGCTGCCACTTCCTGCATGTTGAGGGGGGTTCAGAGTCAGATTGTGCTGAAGAGAAGACCTGGCATCCTCCTTCCCGTTCCAGTGAATGGAAACCCCGTGGTGCCCTCTGCCGTACCTTCAGTGCTTTCGGCTTTTGCCTGTATGGCACTCGCTGCCGGTTCCAGCATGGCCTCCCCAATTCAGTAAAGGGCCTTGATTTGACCCAGGCACCCTGGTCACCACAAGTGCCTGGGAGAGCCCTCTCACCTGCTTCAGATATGCAGTCTTCCTCTCCACCCTCTTCCTCAGCCTCCTCATCACCTCAGTCCCTGCTGGCCTCACCTGCATTCCCTGATGATTCTGGTCCAGTCACACCCCCGTCTGCAGAAGTGGTGGCCAACAACGCTTTCGCCTTCAGCAGCCAGCACCTGAATGACCTGCTGCTGCCACTGGCCTTCAGACTACAACAGCTGGAACAAGCTTCTAGTCTAAGTGCTGGCATGCTGGACCAACCACTGCTGCCATAATGTTTATAACGTCAATCCTTTTTGTAAATAAGTCTTGGCTTTTTATTGATGGCCtcttttttgtaactttttttatgGCCTTAATTTGAGATTTTGCAGTCTCATATTTTGGGGGGGATGTTTTTTACTGCTACTTTGCTTGTCAAGTCTGTCCCAATTTGTGGCAAGTCTATTATAATGCATTGGACTattgtaaattgtattttaacccattgtgtgtgtgtgtatatatggagCCTTTGGGACACAGTGTGAATGTCTTATTTAtggattttaatttaaattgtgGTACTTAAATTATTGTTTCAGGATTGGCGCAGTTTGCATCCTTTGATCTTAATAAAACCACTAACCTTTGTTAGTGCTGTTCTCGGTAAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80554 lncRNA upstream 86151 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 292231 20250058 ~ 20275675 (+) True G67827
TU80206 lncRNA upstream 500741 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 500868 20066030 ~ 20067038 (+) False dock11
TU80168 lncRNA upstream 602820 19962599 ~ 19965086 (+) False G67642
TU80678 lncRNA downstream 65295 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 122210 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 122210 20692263 ~ 20693111 (+) True G68070
TU80850 lncRNA downstream 294825 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 618478 21188531 ~ 21189134 (+) True G68299
XM_026936852.2 mRNA upstream 2489 20549680 ~ 20565417 (+) True mta2
XM_026937251.2 mRNA upstream 23158 20504764 ~ 20544748 (+) False eml3
XM_026937126.2 mRNA downstream 318 20570371 ~ 20577481 (+) True taf6l
XM_034304045.1 mRNA downstream 9721 20579774 ~ 20582012 (+) True LOC113539982
XM_034304143.1 mRNA downstream 17559 20587612 ~ 20619623 (+) True ehbp1l1a
XM_034304144.1 mRNA downstream 17560 20587613 ~ 20630986 (+) False ehbp1l1a
XM_026935945.2 mRNA downstream 17561 20587614 ~ 20630986 (+) False ehbp1l1a
trnaa-cgc other upstream 215421 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 413135 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 466808 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 739016 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 739524 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 450205 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 757293 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 1059023 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 1059023 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1182363 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile