RNA id: XR_004578067.1


Basic Information

Item Value
RNA id XR_004578067.1
length 7771
RNA type misc_RNA
GC content 0.45
exon number 5
gene id rbm14b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9758460 ~ 9774049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtaaagaatgAAGAGCGGAAGTAGACCGACCATTTTGAAATCCTGCACCGCCTGGCGTGATGGATAAGGGCCACACGGTGAAGCTCTTCGTGGGGAACCTGGCCCTGGACACCACGCAAGAAGAACTGTCTGCCATTTTCGAGTCCTATGGCCAAGTGGTGAGCTGCAGCGTCCTTAGGCAGTTTGCCTTTGTCCACTTGCAGGGAGAGGGCGCCGCCGAACGCGCCATACGGGAGCTCAACGGCCGGGAGTTCAAAGGTCGTAACCTGGTGGTGGAAGAGTCCCGGGGACGGCCGCTCCACTCCACCAAAGTGTTTGTGGGTAATCTGAGTGGCATGTGCACCACAGAAGACCTGAAGGAGCTTTTTCAGACTTTTGGGAAGGTCCTGGAGTGTGACAAAGTTAAAGCCTGGCACTCTTCTTCCACAGGCTATGCCTTTGTGCACATGGAGAACAAGGAGGACGCGCTACAAGCCATTGAAGCCTTGCACGGCACCTCATTCAAGGGCCGTCCACTTTCTGTGGAGTTGTCCAAAGTCCAGCCCAGCAAGCAGACGCCGACTGGAAAGATCCCTTGCGTTAGTTGTGGTAAACAGGGTCACTATGCTGGCGAGTGTCCCACTGGGAAACCTGCTCTGGAGCAGTACCAGAGTCAAGCAGCAGTGCtagcagctgctgctgctgctgctgcaggaCTTCCACTTCAGGTACAGCAGAGTGTCCACAACTCGGTCTACAACACCACAACCTTCGACCCCACCTATGCTGCTTTGACTGGCCTCACTGCTGCTGGAGCGAGAGCTGAAGGAGCAGCCGCTGTTGCACCTGCTGTATATGGGGCGCTAGCTAACCAAGTTTACGGAACAGTCGCTAACCAGCTCTATGGAGGCACAATGGCTAATCAGGCTCTCAACACTGGGGCCACTGCAGCTGCTGCACAGGTCTATGGCTCTCTTAACCCTGCCTTGTATGGCCAGGTGACAAGTGGAAGTGTTGCAGCTGCTGCAGCCGCCGCTGCTGCCTACGGGCCACAGGTTTACACACCTGCAGTGGCCAACCCTGTGTTTTTAGCTGCAGCGCCTAGCATGGAAGTACCTGCAGCTGCTGCTGCGGCCGCCGCTGCTGTTAACCCAGCCTACACGGTAGCTTCAGCCATCTATACAGCCAGCCCAGCTTACAGCGCCTTGGGAGCGGCTGACCCGACAGCCATCTTTGAAGCAGCAAGGGCTCAGTACTTTGCACAGGGACAGCAGGTGCTAGCAGAGCAGCAGCCAGCTACTACAAAATCTGGGGAAAGGGACAGGAGCCCGCTCAGAAGATCAGCACCTCTGCTGCCTGACCCAGTTATGAAGCCCTTCATGTACCAGAGGGCAAAGCGCAGAGCGCTACTGCCTACTCCTGCAGGCCGGGAAGAGGCCACGGCCCAGGAAGAAGATGCCGTTGCCAGGTACTATGCAGAGTACTATCAGCAGTACCAGCAGCTCGCCCAGTACCCACAGTACCCCACAGTTCATTATCCAGCCCCGAGCGCACTGGCGGCGATGCCTGCCATCCCCACGCTGTCTGCCGTTCCTGCCGCACTCGACCCACTCAGGCCAGTGCTGCCCGCCGCCCCCGTGCCTGCCGCTGCCGCCATCGCCGTGGCAACTTCCCGCGTGTATGAGCCGCCGCCGATTCCGCCGTCGCGCAAGGAGCCCCTCCTGCGCCGCTCCGAACTCGCCCTGCACCCTCCCGAAACGCCCTTCCGATAGTGTGCACTTCCTCCCACTGTCCCCCCTTCTCTCCTTGCGCCATgtctctgactgtgtgtgtgttgtgtgtggatGGAGTATGTCTGTGGTTTCTGTAAGTGGGTGAgaagtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtttgtctgggtGCCTTGGCTTTTAAGGACTGGAATATCTGACCTTGGTCCTGATCACACATCCGGTGTAGCAAGTCAGGGTTAGGAAAGGGAAAGTGCACACTTTTCTTCATACACAACCTacaatgtaacatttaaaatctCAAACCTTAAACCTGTAGACAGCTTTAAGGTGTAGGCTAAACTATTAGCCATGtgatgttttatgtgtgtgttttttttgttgtttttttgtttttaaaatatattagcCTATGAATGATCCTGTACTTGAGATTTTTAAGATTTGCTTGAAATAATTAGAGGAACTATAAACCAGTTTACATATGTctgtacataaatatataaacacacatattaatTAGATGTcgatacatttttaatgaatgtatgTTTACTCCCCGAGGTGTGTGAAGTGCAGGACCAGGGTTTGACACTGTTTTtatgtgtgcgcgcgtgtgtgtgtttgtcctttGTGTCTTCGagacagtgtatgtgtgttgacGTCAGTTGCGTTGGTTGCAATGACAGAATGACAGGCACACACATggatcaacacacacatgcatttagGGAAACTGCCTTGATCTTCTACCACAGTACATACACACGGCCTTCACAtcctgaggggaaaaaagtaaatgatCAGTGATAACGTGTATCACTCCTCCCCATCCCACATCACCCATCCTGAAAGCTGAAAGACACTGTGAATCCTctctgcttttatttgttttaatgtagCTACACCAATCAGCACGGTGAGAAACAGGGAATAGCCTAATTTGGGAAAGATAAGATGGCTAGATGTGCCATTAGCTGGGATCGGTCCTTTAGCATGTTTAGGCTGATTGGACCTTCATTCATTGACGTAACTGCCATTTTGCATAGTAGAGGCATTTTGGAAGTATCTTATTGATGATTATCATGTTTTTTATGAAATGTACTAAATGGGACTCAagcatcttttaaaaaaaaaaaaaaaaaaaaaaaaaaagtctccataATCTTTGTTTACAGCCATGAATGAGAAGTAGCTTTTTACAGAATGAACATGTTTATAGccaaaatctctctcttttttttcttttaactcaGTGGCTTATTATTCTTATGCCTTATGCCTagagaaatgtataaaagtGTGCTATTTTTTGATTGTAGTCTTAAAATGTGAAACTAGATGGAAGCCAGCACAACGAGAGTGCTATATGTGGTGTGGAATTAAAAGAAATGGGAGATCAGTTTCTTTCAGTCTTCTTTCCCATTCGCTGTACAATATCACTAGACTGCCCCTCATCtatcctccatctctctccatctttctttgcATCTGTCTTTAACTGTGTgccatcattatcatcatcatcatctaccTTACACATACCTACACAATGAAGAGACCAGTGTTAATGGGAATGTCTAAGAAAATGTCTTCATTTGTGTAGTTTGTATGTACGAATATTATGGAATATTAAGGGTCTATGCATgggctttagaaaaaaaatatagtgtaaccaagtatataataaaaatgtttgatcCTTATGAAAGTAAAGGGAGAAAagtttttgggttttgttttaccatttttcttttttgttgatgtttcatgattgtttttcttctgtgaAACGACCAGACTCAAATGAATGGGAGCCTTGAGAGGAAGTGAAAGGACTAGAGACTGCCCCCTGTCCCTCTCGGTTTCTGTGGATGGGGTCCCCCAAAGGAACTGTGGACGCCGTTGGTGGGGTGAGGACAGTTAGCGTCGCGCAATGCACAGGAAGCTCTCTCTGACTCCATGCAGGTAAAAAGCACTGTGCTTCGCCCCACCCCCCTTCCTCTCGTCCACCTGATAGCGCCTGCGCCTGTACTGAACACCTGCTCTTCTCCCCCACTACCCCACCTCCCCCTCTAGTCTCCACTCCTCTGTCAACATCACCACAGCCAATGGGGATCCTTCATGGGCCCAAGTTACGCCACAATATTTTGCTGAAAGAAAACACTGACAGGTTTTGCTTCGCAGCTTGAGTGACAGCAGGGGCTAACAGTTTGCTGCTGCTTCTGTTGGGCTGATATTCATGTTGCTGCGAGTGAAGGGTGAATGTGGTAGTGCCATGAAGATTGGGTGAATGTTAGCAGTTATAGCTGAtgagtaagtgagtgtgtgaagtggtGGAGTGACTGGTTGAAGCTGTTGCTATAGTGAAGAGTGCTTGGGTGTTGGTCTGTTCAGCGTCTTGAGGCTTGGCAGATGTGGACTTTGCTCAAGATCCCCACTTAGTATATCGCCGATCTCGCTTGTCCCCCAACTCTTCCTTTACACCCTCCCTTTTTTTCCACCCGGCCCCCTTCCTCCCCCAGACCTTCCTGAAGTTTGTTCGCCGTACACACACAGCTTGCCGCCGTCCTCGTCGCCTTCCCAAAACCGGCTCTTTTGAGTTTGTTCGGTGTTACGCACTTGCTGCCTAACCGCCTGAACGCACCCCTGAAACTTCCCCTTTGCTGGACATGCTCTGCCAGGCACTTAAACTGATAGTCCTCCCTAAAGCAACATCAGACTCTGCAACTAGAGCTTCAGACAAAAACGATATATGGTTTTGCCCTCCCATCGAGAGATCACAAGTTTGATCCCCCAGCCTTCCATGGCCAAAAGTCATAATTGgaccagtgtggctgcaggatTTCAATCCAGcgaagcaggagccacacctgatccTTGACTGAAGTCAAGGATCAGGTGAATAAACAAGAGGAATCTGTGGCATCTGCTTGTTTGGAATGAAAAGCCTGCAGACACACCATCCCTTTGctgataagattggacaccccccTGCTCTAAGGGGACTAAACAAAGAACCTTCTTGGTTGACCCTTTCTCTACAAGTATACTATGTTAATCAAAGCAACAGTAGCTGTATCATGGGTCAAACGTCTGTTGAATCATGGATGCAGAAGAGAGTTCTTCATTGTGAGTTCTGCCTTCTCATGCTGCATGAGCAGGAGTTCAAAAAGTTCTGGTGGCTTCATGTGGCTCACATCACCTATATATTTTTGTCTAGAGCTCTAGTTACTGATTCTGAGATTTTGGGTGGAAAATCACTTTAACGCCCTCCTGTAGGGCTCGTAGTTTAAATCCTATGATTACACATTGACAGTCGAAAGCCACCCTTCACCCCTAGAGGGTGTGTTAGTGTCAGATTTTGTTCCAGAAGACCTAATCTAATCCAGTAGACATGAATTAGGTAAGTCAGGTCTCCCTTTTATGGGTAAAACTGGAACAAAAGGCACTTCCTGTAGATCAGCTCTTTCGCAGGTGTCATTAACTGTCTTCAAGTAATATCCACCGAAAGTATACACCAGATGTTGAGTTTATTGATGAACACATAAAAGGGACATGAGTGGGACTCCAGGTGTATACGAGTGCAACGTCTGGTGAATACTGACTTGAAGATTAGTGAATCTGGTTGACGCCAAATGTCATTTGTTTGAGGGTGTGCCTACTTTCAACCCACTTCCTCTAAACTCCTTTTGAAGTGTTGTAACTTTTTGCACCGAGTCTTGTTTGAGTTTTCAGCTGACACTGAGGACATCTCAAAATAAGAACACTGATCTTTTGACCAGCTTCTGACCCTGTCTGTCATTACAGTTGTGTTTCATAGAATGTTGCTTGCCCTATACGATTAGAAAAATGGgtttctcaagggttctttgcaTGGTTAAGGGTTCTAGCTTCtgaaattttcctttaaaattttCCTGAAAGGGAGatcctctgttgtagggttctgccTAGGCTATGTTCACATCACCAGTTTCACTGCACACTTGCAATTTTTTTGCTCAGATTGGATCTGTCTATGATCTGTCTATGATCTGTCTATCTTGATGGTTCACATCCATAACCACAAGTGACACACCTGTCACCTGAAACATCCTGCATGCCCACATCAATTTCTTGGATCACTACATTATCATGTAGTGGGTTTGGTAAGTTCCAGTTTTGTTTGAATCGTTTGCCCAAATATCATGTCCATTACCAATTTCCCCATTCTTCCACTGGATGATGACTACAATGACATGAATTCCCATCTGACTGTTCTTATTGCCGCAGATCTATGTCAAAGTAAGGTGGAAAATCTGGTTTGTGTCACTTCAACCTGGTAATGTGAATAGCCATAGAACGCTTGAGGTTTTCCCTAGACAGGCATACTGAGAAAACCTTAAGGGGACTCGATGGaacctttttttattctaaGAGTATATATGCACACTCCTTCTATGAGAAAAATGTTTAGCACAGACCAGTGTGAGGTCAGCTGTGAAGACCTTAAACCCTTCATGTGGAAAGATAAAACCTTCACAAACATAAACCACCTGTAGGTCCAATTACCATTTTGGGGCTGTGACTTTCTCATAGTGATTCattcatacatgcacacacacacactcacttgtgCTGTGTCATAGAATTTCAAACAGCTGAGTTGATGGGAAAACTGGCCCTGAATCTACCTGCCACTTGAGAAAGGATATACAGGCAGTTCATCCTTTAAAAATGGGGGCTAGATCAGGGATATTAACCCACAATTTGTAAAgatccagttacataaaattccttgcaaGCAAAGGTCAGGATAAGCAAATAACATGACTGAAATGTGACAccaatgcttaaccattagtgagTAGTTCACggctataaataagaaaaatctatttatctatctagtcgtttttttaataaaacaatccaTGTTGTCACTCTACTAATCAGACAAGAGAGagttcaatttaaaaaaatctatggaATACTATGAAATCCCTTTCTTGATAAATAATTTAcgtaaatgcatgtgattggctgcgGCAATCGTGttcgtgtttaaaaaaaaaaaaaagagtcacgCTACtatgactattttttttatttcatacattGGTCAATACTGCTACAGCTTTTTTTTGAGTGTTCGGCCCTCTGAAATACTTCCGGACCACAGCCTGCTAGTTGATGACCCGTGGGTTAATGGCTTTTTGGTTTGTCCCACTTGGTAACCACTTAAagttctatatagaaccctaTACATGTGGGTTTGCCcttttacaaaacatttcaaacacaaGTACCCTTCAAGTACCCTTAAGAATCCTAGAACCATCAACCTATCTAAAGAATCCATGAGAAACCCTTTTCCTATAAGAGtgcagagagaagaaaataaaggtGAGTATTCTGTAGCATATGATGAAATGTCTCACAGAATAGGAGATCTGTGCTTACTGAGGAAAATAAGTGTTTCTGTGGAACGTTCCTAGAGAGTGAAGTTGACACCGACCTCTGACAGCAGTCTTAATGTTTCCTACACACTATACCAGAGGCTCTTTGCTTAGCTTGATGTTCTCTAACAGCTAAAAGGCTGCCCCCTACTTTTCTCCTTTTACTCTTGGTGTGCACATTATCACACAGTACTGCCTGTGGTAGCATTTTCTTTAGCCATTGCTTTAAGAAATCCCTTTTTGCCCATTTATCTACCTACTTCTaactttttgtacattttttcctACCAATTCATCTTCTTTTCAAATATGATCTTTTTTGGTGACAATAAACAAAGCAGTTTTTGTCACAGGGATTATGTGTGTTGCCCATAATTATACCGCTTTGGAGATGGTGGGGTAAATGCATGCTCTATAATAATGTTAACTGCACAAACTTGGTAACTGGATAAATGTAATTACTGTTCTACATCAGCTTATGCATACACACAATGTGTTGTCGCATGCAAACCTATAATAAACTAGTCCTATAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73000 lncRNA upstream 165717 9578364 ~ 9592743 (+) True G61638
TU72958 lncRNA upstream 302300 9449043 ~ 9456160 (+) True G61600
XR_003404086.1 lncRNA upstream 408746 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 415346 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 416488 9341759 ~ 9341972 (+) True LOC117597225
TU73062 lncRNA downstream 107019 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 107019 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 140186 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA downstream 140186 9914235 ~ 9917378 (+) False G61696
TU73126 lncRNA downstream 250536 10024585 ~ 10041759 (+) False LOC113540370
XM_026937341.2 mRNA upstream 805 9748448 ~ 9757655 (+) True LOC113540688
XM_026935803.2 mRNA upstream 12412 9724729 ~ 9746048 (+) True LOC113539763
XM_026936838.2 mRNA upstream 34499 9712583 ~ 9723961 (+) True LOC113540385
XM_026936840.2 mRNA upstream 34499 9712583 ~ 9723961 (+) False LOC113540385
XM_026936839.2 mRNA upstream 34499 9712583 ~ 9723961 (+) False LOC113540385
XM_026936879.2 mRNA downstream 2447 9776496 ~ 9805341 (+) True actn3b
XM_026936137.2 mRNA downstream 33272 9807321 ~ 9832280 (+) True gal3st3
XM_026936135.2 mRNA downstream 33272 9807321 ~ 9832280 (+) False gal3st3
XM_026936138.2 mRNA downstream 34617 9808666 ~ 9832280 (+) False gal3st3
XM_026936421.2 mRNA downstream 86845 9860894 ~ 9882713 (+) True si:ch211-168d1.3
TU72678 other upstream 861731 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 1034020 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1695621 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 3161899 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 3327883 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_003403991.2 other downstream 33272 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 86845 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 86845 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 138348 9912397 ~ 9912478 (+) True trnas-gcu
TU73183 other downstream 393797 10167846 ~ 10266279 (+) True G61786

Expression Profile