RNA id: XM_026937138.2


Basic Information

Item Value
RNA id XM_026937138.2
length 2705
RNA type mRNA
GC content 0.50
exon number 17
gene id dars2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25021613 ~ 25047317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTACTAGCGCACTAAACAGTGTGTAAGGATAGTATGCTAGACACAGTGAAGTATTATCTTAGCATACTGtttactacagtagtgtgctGTCTCCGACACCGCTACAGTACAAACTCGTGTTTAGTGTAAGGAACATGAAGTAGGGTACATTTTGAGGATTTCTGTTGACAGTTGTGGCGCAGTTTCTTTCTTTGGAGTATGACGGTTAGATATAAAATTTCACGAATATGAATAAACGCTTCTAGAGAAAGGATAAAGTGAAATGGGAAGGTGACCGTCACGTGACTCGCACGCGCTGTGTACATTATCTGTAGCGGGAGACACCCGAGTGCAGTTTGAGGATAAAACTTACAGTTAAAACTTACAATTCACCACCCGATTTGCTGACATTTTATTAACTGTTTATTAACTTATTCATTTCTTGATAGGGTTAGACAGCTCTTGGTTCGCTCTGTAGGGAAGTAAGTACTATAATGTTTGTAGTCAGAGCCAGGACTTTCCTGTAATGGCCCATAGACGCGCATCAGTGTTGCTGCTAAGGGCTCGCCATGTCCTGCGCTTTTCCCGGCACGCGGCGGTTCCTGTGAGCACGCGCCCCATTTCCGCCTCACAGTCCATCTTCCCACATGTTCCTGCTTCTTCCAGTCATTTCTACAGTAGTACCACTGCAGGTCAGAGCAGTTTCTCCATCCGAAGTCACCTCTGTGGAGAGCTGAGCTCCAGTCTCGTGGGACAGGAGGTTACATTATGTGGCTGGGTTCAGTATCTGAGACAGGATCTGTTTGTGATCTTGAGGGACTTCAGTGGTTTGGTTCAAGTTCTCATCCCACAGGATGAGTCTCAGCGGGAGCTGAAGGATGCGTTCTGTGGTTTATTGGTTGAATCAGTCATCAAGGTGAAAGGAAGAGTCAGGCTTCGTCCAGAGGGCCAGAAGAATACGAACATGTCCACTGGAGAAATCGAAGTGTGTGCCGAGAGCCTGGAAGTGTTGAACACCTGCCGCAAACTGCCTTTTGAGATTAAAGACTTTGTCAAGAAATCAGAAGCTCTCCGGATGCAGTATCGCTATCTCGATCTTCGCTCATCTCAAATGCAGTACAATCTGAGACTGCGATCACGACTTGTGATGAAAATGAGAGACTACCTTTGCAATGTACATGGTTTTGTGGACGTGGAGACCCCAACTCTGTTTAAAAGGACCCCTGGGGGTGCCAAAGAGTTTGTGGTGCCATCTGGAGAACCGGGAATGTTCTTCTCTCTCCCACAGAGCCCGCAGCAGTTCAAGCAGCTTCTGATGGTGGCAGGTCTGGATAGGTACTTTCAGCTGGCACGCTGCTACAGGGACGAAGGCTCCAAACCTGACAGGCAGCCTGAATTCACCCAGGTGGACATTGAGATGTCTTTTGTGGATGCGGCTGGAATCATGGCTCTGATTGAGGGCTTGTTGGAGTACTCCTGGCCAGAAGACAAAGGGACAATCAGTACCCCCTTCCCTTGCTTGACATACGAGGAAGCCATGAGAGATTATGGAGTGGACAAACCCGACACTAGATTTGGAATGAAGCTTGTGGATGTTAGCGAGACGTTCCAGCACACACAGATTGAGTTCATCAGGGACGCCATCGTCCAACCAGGCGGCTGTGTCCAGGCCATCTGTGTTCCAGACGGAGCTaaacactTGAAGGGCAAGGACATGGAGTTCTTGAAACAAGCAGCCAAAACTCAGTTCAACCAGGAGGTGGACTGCATGCTGGTTAGGGCAGAGGGATCCATCAAATCTCCTCTTGGTCGCTTGATACCAGACACAACAAGGCTAcagctgctgctgaagatgaGGGCCAACGCCGGAGACCTGCTCCTCATTGCTGCCGGAGCCCAGGAGCGGGTGcGTCCACTTCTGGGGAAACTGAGATTGCAGTGTGCTGAGCTGTTGGAGGGTCGCGGTGTGCCTGTACGTGACCCTGCGGCCTTTCACTTCCTGTGGGTGGTGGACTTTCCCCTCTTTTTACCTAAAGAGGATGAACCGGAGCAACTGGAATCAGCACACCACCCCTTCACCGCACCCATTCCCGAGGATGCCCACCTGCTCTACACCCAGCCCCACAAGGTGCGTGGCCAACACTACGACTTGGTGCTGAACGGCTGCGAGGTCGGTGGTGGCTCCATCCGCATTCACAATGCCGCTCAGCAGATCTATGTCCTGGAGAACATCCTCAAAGAGGACccgtctctcctctctcaccttTTGGAGGCTTTGGACTCCGGGGCCCCTCCACATGGCGGGATTGCATTAGGTTTGGACCGGCTGGTGTCCATCATCGTGGGGGCTTCCAGCATCAGGGATGTCATCGCCTTCCCCAAGTCCTTCAGAGGTCATGACCTCATGAGCCACGCCCCCAGTTTGTTGCCAGAGGAGGAGCTGAGGCCATACCACATCTCAGTGCTCTGGCCTAGTGCTAAAAATGGACAGGGTGACAAACCCTGACTCTTCCACTGTATATCATCTTCCTGAAACTTCTTGTACCTTGACTCTCTTTGTGAAGAGAGGTAAGAGCAGGAAGCCAACTCCATTTCATGGAGAACTAGAGAAACACTGAGCAATCTCAGAGCTATCAAACCACTTTTTCTGTTAACCACCCTCTTCAGATTTCTGTAACATCTGTActcatgtgaacattaaagaCATTTATTCTTCtccttca

Function

GO: NA

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83637 lncRNA upstream 23388 24997916 ~ 24998225 (+) True G70520
TU83566 lncRNA upstream 172126 24839247 ~ 24849487 (+) True LOC113540553
XR_003404038.2 lncRNA upstream 174892 24839221 ~ 24846721 (+) False LOC113540553
TU83567 lncRNA upstream 174892 24839247 ~ 24846721 (+) False LOC113540553
TU83289 lncRNA upstream 271700 24681981 ~ 24749913 (+) True G70204
XR_004578007.1 lncRNA downstream 280901 25328218 ~ 25330540 (+) True LOC117597084
TU83828 lncRNA downstream 509520 25556837 ~ 25557761 (+) True G70695
TU83897 lncRNA downstream 511110 25558427 ~ 25561346 (+) True G70763
TU83912 lncRNA downstream 538009 25585326 ~ 25585534 (+) True G70778
TU83914 lncRNA downstream 538936 25586253 ~ 25586458 (+) True G70780
XM_026937276.2 mRNA upstream 8307 24994877 ~ 25013306 (+) True klhl20
XM_026935923.2 mRNA upstream 150449 24859026 ~ 24871164 (+) True kif2c
XM_026935924.2 mRNA upstream 150449 24859027 ~ 24871164 (+) False kif2c
XM_026936109.2 mRNA upstream 214209 24792295 ~ 24807404 (+) True kiss1ra
XM_026936117.2 mRNA upstream 424504 24587207 ~ 24597109 (+) True zgc:113531
XM_026936668.2 mRNA downstream 222905 25270222 ~ 25552839 (+) True astn1
XM_026936669.2 mRNA downstream 222905 25270222 ~ 25552839 (+) False astn1
XM_026936671.2 mRNA downstream 222906 25270223 ~ 25552839 (+) False astn1
XM_026936670.2 mRNA downstream 222906 25270223 ~ 25552839 (+) False astn1
XM_026936672.2 mRNA downstream 222906 25270223 ~ 25552839 (+) False astn1
XR_003403979.2 other upstream 150350 24859026 ~ 24871263 (+) False kif2c
TU83028 other upstream 911724 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1701270 23318504 ~ 23320343 (+) True G69509
XR_004578016.1 other upstream 3259312 21756781 ~ 21762301 (+) False LOC113540377
XR_003404013.2 other downstream 660510 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 850818 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 1181447 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 1240973 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 1240973 26288290 ~ 26292784 (+) False zgc:66427

Expression Profile