RNA id: XM_026937145.2


Basic Information

Item Value
RNA id XM_026937145.2
length 3570
RNA type mRNA
GC content 0.47
exon number 15
gene id dvl2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13399435 ~ 13416861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCAGAAACCAAAATAATTTATCACATCGACGAAGAGGAGACGCCGTATTTGGTGAAGATTCCCATAGCGGCGGAGAAAATCACTTTATTGGATTTCAAACAAGTGTTGAACAAACCAAACTACAAATTCTTCTTCAAGTCTATGGACCAGGACTTCGGAGTGGTCAAGGAAGAGATTTCTGATGACAACGCTAAGCTGCCCTGCTTTAATGGAAGAGTGGTTTCCTGGcttGTGTCttcagatgttcctgcagcagAACCTGCGCCGCCTCCAGTGGAGGTCCGAGCTCAACCGTCACCGCCTCCTCCCCCCCTTCCGCCTCCTCCAGCTGAGAGGACCGGGGGCATCGGAGACTCAAGACCCCCCTCATTCCATCCGAACGCTGCAGGCAGTGTGGAGACGCTGGATGAACAGACAGAGACTGAGTCTGTCGTGTCCTTCAGGAGAGAGAGGCCTCGCCACAGAGAGAGCATGGAGCACGGGTCACGTATGAATGGTCAGTCACGTATGGAGAGGCACTTGGCAGGTTATGAAAGTGCCACCACAGTGATGAGCAGTGAACTGGAAACCACCAGCTTCTGTGATTCAGATGATGACGACACCATGAGCAGGTTTAGTAGTTCAACAGAACAGAGCACTGCCTCTAGACTGCTAAAGCGCCACCGCAGACGCAGGAAACAGCGTCCTCCAAGGCTGGAGAGGGCATCATCTTTCAGTAGTGTGACAGATTCAACTATGTCTCTGAATATCATCACAGTCACTCTCAACATGGAGAAGTATAATTTCCTGGGCATCAGTATTGTGGGACAGAGTAATGAGCGAGGTGATGGAGGCATCTATATTGGCTCCATAATGAAGGGAGGAGCAGTGGCTGCTGATGGGCGAATCGAGCCTGGGGACATGCTGCTTCAGGTGAATGATATTAATTTTGAGAACATGAGCAATGATGATGCAGTCAGGGTACTACGGGAGATTGTGCACAAACCAGGACCCATCACTCTGACAGTGGCTAAATGCTGGGACCCTTCACCTCAAGGCTACTTTACACTTCCACGTAATGAGCCTATACGACCTATAGACCCTGCAGCCTGGATCACTCATTCAGTAGCCATGACAGGAGCGTACCCACCTTACCCAGGCAGTACAATCACATCCAGCTCATCTGTCACTGAGACTGAACGCTTTGATGAGTTTAACCTGTCTCTTCACTCTGATATGGCATCTGTGGCAAAGGCTATGGCCTCTCCTGAGTCAGGTCTagaagtgagagacagaatgtgGCTAAAGATCACTATCCCTAATGCCTTCCTGGGCTCCGACGTGGTGGAGTGGCTCTACCACCACATAGAGGGCTTTCAGGACCGCAGAGAGGCTCGTAAATATGCCAGTAACCTCCTGAAGGCTGGTTTCATTAGACATACTGTCAATAAGATCACTTTTTCAGAGCAGTGCTACTACATCTTTGGAGACTTCAGCGACTGTGAGAACTACATGGCCAACCTGTCCCTCAATGATAATGATGGTTCCAGTGGAGCTTCAGACCAAGACACACTGGCCCCTCTCCCATTACCAGGGGCGACACCGTGGCCCCTGCTCCACTCTTTCCCATACCAGTACCCACACCCATACTCAAGCCAGCCACCTCCATACCACGAGCTCTCCAGCTACAGTTACGCCCCTGGCAGCACGGGTAGCCAGCACAGCGAGGGGAGTCGGAGCAGTGGCTCCAATCGGAGTGAGGGTGAGAGGAGGAGGGGTAGTAAGAGTGGCAGCACTGTGGCTGGCAGCACACGTGACGACAAATCTCCCAACGGGGGTGACTCACGCTCTGGCAGCGGCAGCGAATCTGAATACTCGGTGCGTAGTAGCCTAAGGAGGGACCATGGCTCAGCCACGCCAAGTGAGCACAGTCATGCTAGTCAGCGCTCGCATCACCGGGCACCGCCCCCTCACCTCGCTCCATACCCACCTGGCATTCCCATTCCATACAACCCCATGATGGTAATGATGGTACCACAGCACCCACATCCACACCCAGCATTGGGAGCTCCTCATCCGCAGACAGCTGGAACGCCTCTACACCCAGGCCTGCCTCCACCCAGTAATCCTGGAGGACCTCCTGGAGCTCCACCCACACGTGACCTGGGCTCTGTCCCACCTGAGCTCACAGCCTCCAGGCAGTCTTTCCACCTGGCCATGGGAAACCCCAGCGAGTTCTTTGTGGATGTCATGTAGAGAAAGTTAACACAggatatgtgtgtctgtgtgtgggatGGATGAGTGAAccagtgagtgattgagtgaatgaatgaaacctCTATGTGACTTAATCATGTAATAACTGTGAGCCTCATTCAGTAAGCGACTGAGATGTAACACTTGGTATTGCTGCAGGATAGCTCTATATAGTTGGCATCTATCCTTGCCGGCAGGAACAGGGTTTCTGTATAAAGCTGGACGTCTTGCACAACTCAGATTTAGCACATCAAGTCATTTTAAAGTAAGTTCATTCTCACCAACAAAATGCATCAGGGTCTGGCCTCCCTAACTgcgctgttttttttgtttttttttaaacatttccaaacatttcctgagactttttttcctgcaaatatttatcaaattatgcaGGGAGCACTATACTCTGAATAACATAGGAATATCTCTGAGGCCTCTTTATATCCTATGAAAATATTTGCCTTGGCAAAACTCATCCTGCCCAAACGTTAGTTCTTTTGATCTctaaatatgtgtttgtgtttctgcatAACCTACCTGCAGAGGTGTgttttcatttgtataaataatgCAGATTATGAAAATCATGTTTTCCATTAGATACTCTTTTCACAGAAAAACTAAGTCAACAAGCAGACAATTTAACtagtatttttgcattttacagaaataaaaaatcaagTTCATAAAGGATTCTGGATGTTTTTGACAAGGCAGCTATGAAGTGGTGTTAGTAAGTTGTATTTTCTCAAATCCTTGCAACCATGAGCTTCCACAGCtgaaatgtttaaacataaGGGGAAGCTTTCTAACATTATGGCATCTAGTACTGAAGGGCTGTTCTTTACAGTACACCTTTGCAGTGtgtaaaatgcattaataaatgacGATAAACTAATGTGAAACAGGGTTTGACTTATAGgattataaacaattttttgaAGGTCATTTTCTCTGGTACTGTGGACTAAAGTTGACTGAAGAGTAATCATGGTCAGAAacgttcaccatcaaacacagcTGCATATGTTGGCAGATTAGAGTTGTGGTACAGACAATGGTACTTGGAGAGGGAGAGTTAATGCCAAAAATGGTACTTATGCTGGGTAGAACAGGCAGTTTTTATAATCATATTTCACATTTCtactcatttttttgtttgtagacTGACAAGCATAATCATTTTtgtatgaatgaatatatgGATATAATCAAAGCATACAGGTGCTAAATGAAGATTGAACAGAACAGTGCCACTTTTGGTGCCATGTTGTTTGTTGTCACTTTTATGTTTCTTACtcaaaataaatttgtaatagAAGAGAA

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75666 lncRNA upstream 11481 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 113601 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 121731 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 132401 13259391 ~ 13267034 (+) False LOC117597082
TU75440 lncRNA upstream 132956 13258874 ~ 13266479 (+) True LOC117597082
TU75685 lncRNA downstream 360 13417221 ~ 13417441 (+) True G63901
TU75682 lncRNA downstream 42501 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 87599 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 153141 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 278788 13695649 ~ 13748072 (+) False G63973
XM_026935898.2 mRNA upstream 5263 13391809 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303510.1 mRNA upstream 5263 13391810 ~ 13394172 (+) True si:ch73-335l21.2
XM_026935896.2 mRNA upstream 5263 13391811 ~ 13394172 (+) False si:ch73-335l21.2
XM_026935960.2 mRNA upstream 24385 13328033 ~ 13375050 (+) True si:ch73-335l21.1
XM_026935961.2 mRNA upstream 24385 13328033 ~ 13375050 (+) False si:ch73-335l21.1
XM_034303680.1 mRNA downstream 3672 13420533 ~ 13436596 (+) True acadvl
XM_026937015.2 mRNA downstream 26933 13443794 ~ 13450823 (+) True LOC113540489
XM_034303789.1 mRNA downstream 51691 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA downstream 51706 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA downstream 52958 13469819 ~ 13475037 (+) False LOC113539889
TU74787 other upstream 1104312 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1702140 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2736028 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2833711 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2867907 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 1516 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 53908 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 141762 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 288715 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 838883 14255744 ~ 14269340 (+) False brms1

Expression Profile