RNA id: XM_026937152.2


Basic Information

Item Value
RNA id XM_026937152.2
length 7394
RNA type mRNA
GC content 0.50
exon number 38
gene id chd3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16371997 ~ 16418930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaccaagaaaaagaaaaaagacgaCGACGACAGTACACACGAAGAGACCACAAAACCAGTAGAGCTAAAGACATCTGCTCAGTTGGCAAAAGACTGGGGTCTGGAGGATGTGGATCATACTTTCACAGAGGAGGATTATCGCACACTAACCAACTACAAGGCCTTTAGCCAGTTCATGAGCCTATGATAGCTAAGAAGAACCCTAAGATCCCCATGTCTAAAATGATGACCATCTTGGGAGCAAAGTGGAGAGAGTTCAGCTCCAATAACCCCTTCAAAGGTTCAGCAGCCGCTATTGCAGCTGCAGCAGCCGCCGCCGCGGCAGCCGTTGCTGAGCAGGTCTCCGCGGCAACCGCCTCGCCCGAGCCGCCCCCTCAGCCACCCCCACTTCGCAAGGCCAAGACCAAAGAAGGGAAAGGCCCTGGTTATAAGAAACGCAGCAAGAGTCTACGCACCTCTGACAAAAAGAAGCCCAAGCCTAAGAAGATGGCTCCCCTCCGAATAAAACTGGGAGCTCTCGGGAACAAGCGCAAGAAGAGCAGCTCGaGTGAGGATGTGGACGATGATGACTCTGAGCAGGAGAACTCGAGTGTTCACAGCTCATCAGTGCGTTCAGACAGCTCCGGCCGGGTGAAAAAGAACAAGCGAGGTCGGccagcaaagaaaaagaaaaaagtgCTGGGAGATGAAGATGGTGATGGCTATGAGACAGATCATCAGGACTACTGTGAGGTGTGTCAGCAGGGAGGGGAGATCATACTGTGTGACACATGCCCCAGAGCGTATCACCTAGTGTGTCTGGAGCCCGAGCTGGAGAAAGCTCCTGAGGGCAAGTGGAGCTGCCCACACTGCGAGAAAGAAGGGATTCAGTGGGAGGCGAAAGAAGAAGACTTTGAAGAGTTTGAAGAAGAGTGTGATGATGGCGGAGTGGTGGAGCCAGGAccaggaggagaggaagaagaggatgatCACATGGAGTTCTGTCGAGTGTGTAAAGATGGAGGGGAGCTGCTATGCTGTGACTCCTGCCCTTCCTCTTATCACATACACTGCCTCAACCCCCCACTGCCTGAAATACCCAATGGAGAGTGGCTGTGCCCCAGATGTACATGTCCACCAATCAAAGGGCGAGTACAGAAGATCCTACACTGGCGATGGGGTGAACCTCCTCCTCCTGTGCCTGTTCCTCCGCCCCCAGATGCACCGCCTGATGCTCCACCCCCACCTCCCATGAAAGGCCGGCCAGAGAGAGAGTTCTTCGTGAAGTTGGCAGGACAGTCCTACTGGCATTGTACATGGATCACTGAacttcagCTGGAGATCTTTCACTCTGTGATGTTCCGTAACTACCAGCGGAAGACTGATATGGATGAGCCACCTAGTCTGGACTATGGCTCTGGAGGAGAGGAGGATTCTGGGAAAAGTGAGAAACGACGGGCCAAAGACCCTCAATATGCTATCTTAGAGGAGAAGTACTACCGCTATGGCATTAAGCCAGAATGGATGATGGTACACAGAATAATTAACCACagtgtggataagaagGGGAACTACCACTACCTGGTGAAGTGGAGAGACTTAACTTACGATCAGTGTACATGGGAAAGAGATGACTTGGACATCCCAGAGTTTGGCATCTATAAGGCAGCTTACTGGAGACACAGAGAGGAGGTGATGAAGGAGGACCCAGACAAGCCAAGGAAGAtgaggagaaaagaggagaatGATGAAGCTCCTGGCACGCCTGTTAATGATCCCACGATAAAGTACGAGGAGCAGCCGGACTTTGTGACAGTAACAGGGGGAACTCTGCACCTCTACCAGCTGGAAGGTCTCAATTGGCTGCGCTTCTCCTGGGCACAGGGCACCGATACCATCCTGGCTGACGAGATGGGCCTGGGAAAGACTATCCAGACCATTGTCTTTCTCTACTCACTCTTTAAAGAGGGTCACACCAAGGGGCCGTTCCTGGTGAGCGCCCCActctccaccatcatcaacTGGGAGCGGGAGTTTGAGATGTGGGCTCCAGACTTTTACGTGGTCACATACACAGGGGACAAAGACAGTAGAGCTATCATCCGTGAGAACGAGTTCTCCTTTGACGACACTGCCGTGAAAGGAGGGAAGAAAGCCTTCAAACTGAGGAGAGAAGCTCCCATTAAATTCCATGTGTTGCTGACATCCTATGAGCTGGTGACTATTGACCAGACTGCCCTGAAATCCATCGACTGGGCCTGTCTAGTGGTGGACGAAGCTCACCGTCTCAAAAATAATCAGTCCAAGtttTTCAGGCGACTGAATGACTATAAGATTGATCATAAACTGCTGCTAACAGGCACGCCCCTTCAGAACAATCTGGAAGAGCTTTTTCACCTGCTTAATTTCCTCACGCCCAACCGCTTCAATAATCTGGAGGGCTTTCTGGAGGAGTTTGCGGACATCTCCAAAGAGGACCAGATCAAGAAGCTGCATGATCTGCTGGGGCCGCACATGCTGAGACGGCTCAAGGCGGACGTGTTTAAGAACATGCCGGCAAAAACGGAGCTCATTGTGCGTGTGGAGCTCAGCCCTATGCAGAAaaaatacTACAAGTTCATCCTGACAAGGAACTTCGAGGCACTGAACTCGAAGGGAGGAGGGAACCAGGTTTCTCTGCTCAACATCATGATGGACCTGAAAAAATGCTGCAACCACCCCTACCTCTTTCCTGTCGCATCCATGGAAGCTCCAAAGACGCCAAGTGGATCATATGAGGGGGTCAGCCTCACAAAGGCTTCTGGGAAACTGATGCTGCTGCAGAAAATGCTGAGAAAACTGAAAGAGCAGGGCCATCGTGTGCTTGTGTTCTCTCAGATGACTAAGATGCTGGATTTGCTGGAGGATTTCCTGGACTATGAGGGTTATAAATATGAGCGCATTGATGGAGGGATCACTGGAGCACTACGACAGGAGGCCATAGACAGATTTAATGCTCCAGGTGCACTTCAGTTCTGTTTCCTTCTGTCTACAAGGGCAGGGGGACTGGGAATCAATCTGGCCACTGCAGACACTGTCATTATCTTTGACTCTGACTGGAACCCTCATAACGATATTCAGgcCTTTAGTCGGGCCCATAGGATTGGTCAGGCAAATAAGGTGATGATCTATCGGTTTGTGACTCGTGCATCTGTTGAGGAACGGATTACCCAGGTAGCCAAGCGTAAGATGATGCTGACCCACCTGGTGGTGCGGCCAGGGCTGGGTTCCAAAGCTGGCTCCATGTCCAAACAGGAACTGGATGACATCCTGAAGTTTGGCACCGAGGAGCTATTCAAGGATGAAACTGAAGCGGGAGACAATAAGGATGAGGACAGCAGCGTGATTCACTATGATAATGCCGCCATTGAACGTCTGCTGGACCGGAGTCAGGATGCCACTGATGACACAGACATGCAGAACATGAATGAGTACCTTAGCTCCTTCAAAGTAGCCCAGTACACAGTCCGAGAAGACGACAAGATTGaggagattgagagagagatcattaaGCAGGAGGAGAACGTAGACCCAGATTACTGGGAGAAGCTTCTCCGGCACCATTacgagcagcagcaggaggatcTGGCCCGCAACCTGGGCAAGGGCAAGAGAGTCCGCAAACAGGTCAACTACAATGATGCTGCACAGGAGGATCAAGAGTGGCATGCTGATATCTCAGACAACCAGTCTGAATACTCTGTGGGatcagaggaggaggatgaggactttGATGAGAGGCCAGAAGGTCGAAGGCAGTCTCGGAGGCAGATCAGAAACGAAAAGGATAAACCACTGCCTCCTCTGTTGGCTCGAGTGGGTGGCAACCTTGAGgtATTGGGCTTTAACACGCGTCAGAGGAAAGCTTTCCTGAATGCGGTGATGAGATGGGGTATGCCTTCTCAGGATGCTTTCTCCTGCCAGTGGCTGGTACGAGATCTGCGTGGCAAAAGCGAGAAAGAGTTCAAGGCATATGTTTCTCTCTTCATGAGGCACTTGTGCGAGCCGGTAGCTGATGGCTCAGAGACATTTGCCGATGGCGTGCCGAGGGAAGGTCTGTGCAGGCAACCTGTGCTGACCCGCATCGGAGTCATGAGCCTGGTGAAAAAAAAGGTTCAGGAATTTGAACACATTAATGGAAAATGGAGTATGCCTGAGCTGAAGCCTGAAGTCACTGGGGACTCCAAGAAATCCTCAAGAGCTTCCTCACCTGCCATTAAAACAGCTACACCCACTCCAGAGCAGAGCTGCAACAACACACCCTGCACCTCAAAgccagCCACACCCTCTCCacctgagaaaccagaaaagaTTGGAAAGGAGGGAGAGcgagaagagggagagagccTGACtgatgcagagaaagagaaggggagagaggggaaagaaggagaaaacCCAGACAGTACAGAATCTAAAGAGGAGACTGAAAAAGATACTGCACCCAGTGAAATGTCTGAGCCATCTGAAGGGTTCACAAGAGCAAGTGCAGGAGACTCCAAATCAAAAGAAGCTTCTGACACCATTCCACCCTCACCAAAGTCAAAGTGTGGGAAAGAAAAGGGTGGAGAGGAGGAGAGCCCTAAGAAAGAGGCTGGTATtgaaaaaatgaaggaagaaTCCTCATCAGAATTTCCTGCAATCAAAGACGAGAAGCAAGCAGCAGAGAAAGGGGAGAAGAGTGAAAAGGGAGGAACAGGTGAAAAAGTcatggaagagaaagaaaaaactgagGAGACACCTGTTTCTACAGAATCAGcagaaaagaaggagaaagcaGAAAGCCAAATGCAGGATGTTAAGAACGATGAGGGCAAGATGGAAAAGGATGGTGGGAAAGACGTCAAAGGGCAGAAGGAGGAGACCACCAAGGGGAATGGCAAGCCAACTGAGCGTCCGCGGTTCATGTTCAACATTGCAGATGGAGGATTTACAGAGTTGCACACGCTGTGGCAGAATGAGGAGCGAGCAGCAATCTCATCTGGGAAGATGAATGAGATCTGGCATCGGCGGCACGACTTCTGGCTGCTGGCTGGAATCGTACTTCATGGCTATGCTAGATGGCAGGACATTCAGAACGACCCCCAGTTTGCCATCGTCAATGAGCCGTTCAAGTCCCAAGCCAACAAGGGCAACTTCCTGGAGATGAAGAACAAGTTCCTGGCCAGGAGGTTTAAGCTGTTAGAGCAGGCATTGGTGATTGAGGAGCAGCTGCGTCGGGCGGCGTACCTTAACATGACGCAGGACCCCACTCACCCGGCCATGGCCCTGAATGCACGCTTCGCTGAGGTGGAGTGTCTGGCAGAATCACACCAACACCTCAGCAAAGAGTCGCTTGCGGGAAACAAACCTGCCAACGCCGTCCTACACAAGGTTCTCAACCAACTGGAGGAGCTGCTCAGCGATATGAAAGCTGATGTAACGCGGCTTCCTGCCACACTGTCCAGAGTCCCACCAATTGCAGCACGCCTGCAAATGTCCGAGAGGAGCATCCTCAGCAGACTGGCCAACAAGGGCAATGAGACTCACACACCACCGCCCATCCCACCTGGACCGTATGCAACTCCACAGAACTACGGGCCCCCCTTCACTCCAGCACCACCAGCCATGGCTCTGGCTGCGGCCAACTACAGCCAGATGCCTCCAGGCTCGTTCATATCAGAAGCCCCACTCTGCCTGAAGACCAAAGAGCACAACGTCCTACAGCGCCAGCGGGTGGTGGACCTTTGGAAGGACGGCAGGTCGGAAGGGTCTATCGGACAGGAGCTGCACATGCCAAAATCCACCGTGCACAGCATCATCGTCAAATACCGCCTCAGCAACACGGTGGAGAACCTCCCTCGCAATGGCCGACCCAAAAAACCCTAACTGATAGATGCCATGGACAAAAGCACACACTCAGTGGGAGAaagaatgaagagagagaaacgaGTGAGggtagaaagagagaaatgttaGAAATCAAGCCAGAAGAAGCTTAGAAAGTCAGGCTGAGAAGGTTACAAACCTGATaaatggagagagggagagtgaaaaGGGGAGAGGGGTACAGAAGAGGGGCTGTCAGGAAACAGCTTAGCacagagaaaaaggaagaaaaggaggGAAGAGCTGAGAGCAATTTAAGGTACATACGACCTCCCTGGCTGCCAAAGCAAAACAATAAAGTCATCAGGAGTAATATGAACAGACGGCAAGGTGAATAGTCTGAATAAGGTGAAGCGAGCAAGCATGACAAAAGAGGAAATCACCCAACCGTTTCCAGTGAAAAGTGGGAGCCAGTGAGACAGAGTGCAAAAAGcacccctctctctcaccctcactACCCCCCTCTaactttcatctctctctctgacagaaATCCCAGTGGATTCATCGTTCACTTGGCAAGAGAAATAAGTGCACATGTCGAAGTACCCAGGACCTTTACTCCCTAATTCCTGtggaaatctctctctccctctctctctctctctctctctctgtctctctctctctctggagccCCTTCATGCATACAGAGGGAGTACTGAAACATTTCATAGTGTCAAAACCAAGGAATTCCTGAGATGGATTgcaagtttgttttgttttcccaaCATTTCCCATCCTGATTGGAGGCTTTAGGGAATCACAGATTGAAGGGTGAGATGGACAGCCTCAGTTTTTTGCACCTCTGTGGTGGACTGAGTAGTCCGGGGAAAGAAGCATAATTGTTTATTGCTCCTTATCAGCGATcctctgaaaaatgaaaaaatgaactgaaaccAGGACGATGccaagaagcttttttttttttttttttaaaacatttcttaaacaacttttttttttttaattatggaGGCAAAGCTATGAACTTTTACAGCTGTCTGACACACTATCTAATTTGCGCAGACTGACCTTGAGAATGGCCATTGGGGATATTGGTGTGtggtatgtggtgtgtgttggcTAGACACAGGTAGCCTCAAATCTAAGCAGAGCATCTGGCCCTGGGGAAGTAAACATAACTTCTGTTTTTCTACAATATATGGCAGTGCCATGCTGAGATTCCAATGTTGGTAGTCCTAAGATGGGATTTTGTGGCTTAGAATCTGAGATTGGTTTGGAGGACAAGCAGGTCTGGGAGCAGTCCAAAGGGACAATGCTTGAATTCCTGTGCAGTAGCAGAGCCAGATCAGATTAGCCAGATCAGCCCCTCAGCGGGACCCTCATACAGTGCAGAACTGCTGTGGGAGGACTCTCACTGTGcgtgtgcatacacacacacgcacacacacacacacacacacacacatgcattcacagGTACAAACTTAGAGTCTAAGGagcataaatcataaataaaggTTTGAGACATTTTGTGTGTACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 143823 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 311477 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 319793 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 373477 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 504167 15869198 ~ 15870771 (+) True G65115
TU77422 lncRNA downstream 18760 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 20244 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 102936 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 157986 16569687 ~ 16577737 (+) True G65580
TU77679 lncRNA downstream 180746 16592447 ~ 16594457 (+) True G65601
XM_026937153.2 mRNA upstream 3981 16367967 ~ 16370957 (+) True LOC113540582
XM_026936717.2 mRNA upstream 8747 16356241 ~ 16366191 (+) True dnajc3b
XM_026936718.2 mRNA upstream 18975 16352761 ~ 16355963 (+) True cldn15a
XM_026936976.2 mRNA upstream 25537 16343344 ~ 16349401 (+) True fis1
XM_034303999.1 mRNA upstream 55772 16311214 ~ 16319166 (+) False LOC113539780
XM_026937342.2 mRNA downstream 48890 16460591 ~ 16465228 (+) True si:dkey-19b23.8
XM_034304130.1 mRNA downstream 58559 16470260 ~ 16490483 (+) True zpax4
XM_026936158.2 mRNA downstream 58559 16470260 ~ 16477852 (+) False zpax4
XM_026936157.2 mRNA downstream 58559 16470260 ~ 16477711 (+) False zpax4
XM_026936347.2 mRNA downstream 193995 16605696 ~ 16648129 (+) True shroom4
XR_003404046.2 other upstream 4254 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 55772 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 334954 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1716002 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2105598 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 348818 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 349048 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 349280 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 349565 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 349871 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile