RNA id: XM_026937161.2


Basic Information

Item Value
RNA id XM_026937161.2
length 3837
RNA type mRNA
GC content 0.44
exon number 14
gene id ppp2r5b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16776894 ~ 16804016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGATGACTGAGGAGAGATGGATGAAGGGTTTTAGATGAGGCTGCTAAGCTCCTCCGCGCGTGAACATGATAAGGACGAGGCTGCAGGGACATGACTGATCAACACTCCCTTCATCTGTACTGCATCCGATCCTTAATCtcaactgagagagagagagagagagagagagagagctaatgCGCTGTGTGTGAGGCCATGATGGATATGTGATGGAGCAATAAGAACAATGGCTCTGTGCGCATGCAGTGTGAGTCCCAAAATACCGCGGctataatgagagagagagagagagagagagagagggcttgGAGGAAGGAGACACAGACGACGACTAGGCTGTAGCCTGCGAGACAGATAGATGATCATGAGCTcggatttattttaaagaaactgGGTGGAAAAAAGACATAAATCGGAATCGGTGCTGGTTGGATTAGTGCGCGAACAAGCGTGggaaggatttaaaaaaaaaaaacaataaacaagaaacGTTTTGAGGTCGATAGCGCAAGCGCatGCTTCTATCAGGCTCGCACCCATGGATCAGCCCACCAAGCTGCCCCCGTCGAGTCCGTCCTCGCCCACGGCGGCCTTCTCTGTGCCCAGTGCTGAGAAGGTGGATGGCTTTCCACGCCGCTCCATGCGTAGGGCCCGCCAGAGAAGGTCACACAGCTCGTCGCAGTTCCGTTATCAGAGCTCGCAGGTGGAGCTCACACCTCTGCCTCCGCTCAAAGATGCCCCAGTGGCAGAGCTGCATGATCTGTTCTGTAAGAAGCTGCAGCAGTGCTGTGTGCTGTTTGACTTCCTGGACTGTGTGGCTGACCTGAAGGGGAAAGAGATCAAGCGTGCGGCACTAAATGAGCTGGTGGAGAGCGTGGCCACCAGCCGCGGTATTCTCATTGAGCCCCTCTATCCTGAGGCTATCAAGATGATCTCAGTGAACATCTTCCGTACTCTGCCGCCCAGTGAGAACCCAGAGTTTGATCCAGAGGAGGATGAACCCACACTGGAGGCCTCCTGGCCCCATTTACAGTTGGTCTATGAGTTCTTTTTACGCTTCTTGGAGAGTCCTGATTTCCAACCCTCCATGGCCAAACGTTATGTGGATCAGAAATTTGTTCTGCAGTTGCTGGAGCTGTTTGATAGTGAGGACCCCAGAGAGAGGGAATATCTGAAGACTATACTGCATCGTGTCTATGGCAAACTGCTCGGCCTCAGAGCGTACATCCGGAAACAGATCAACAACATCTTCCTCAGGTTCATTTATGAAACTGAACACTTCAATGGAGTGGCTGAACTGCTGGAGATTTTGGGCAGTATCATTAATGGCTTTGCTCTGCCTCTGAAGTCAGAGCACAAGCAGTTCCTGGTGAGGGTCCTAATCCCCTTACACACTGCCAAatctctgtccatctttcaTGCACAGCTTGCCTACTGTGTTGTGCAGTTTATGGAGAAAGACGCAACTGTTACAGAATATatcATCAGAGGGTTGCTGAAATACTGGCCTAAAACATGCACTCAGAAAGAGGTAATGTTCCTGGGGGAGATTGAGGAGATTCTGGATGTGATTGAGCCATCACAGTTTATCCGTGTGCAGGAGCCACTTTTTAAGCAGATTGCCAACTGCATCTCCAGCCCCCACTTCCAGgttgcAGAGCGGGCTCTGTATTTCTGGAATAATGAGTATATTCTGAGTCTGATCGAAGAGAACTGTCAGGTCATCCTGCCTCTGGTCTTTGGCACGCTTTACCGAGTCTCCAAAGAGCACTGGAACCAAACTATTGTGTCACTTATCTACAACGTCTTGAAGACCTTTATGGAGATGAATAGTAAGCTTTTTGATGACCTTACTGCCTCCTACAAAGTGGAGAAACAGAAGGAGCTGAAGAGGGAGAAGGAGCGTGCTGAGTTGTGGAAGGGGctggaggagcagcaggagcGGAGGCTGCAGAGTCTGGGGGAAGCAAGTCGCAACCAAAAGAACCTGCAAGAGCGAGAGAACCTGAGCAAGAACGAGCCGGAGAGCAGCGCTGCCAATGCcacctagaacacacacacacactcactcacacacacacacacacacatacacacagacaaatgcacAAGCCAATATGTACAAACATGGAgaacataataacacacactttgttttACTGACAGTTTTTACTCTGGAACTTACCATCACCtcttaaaacatacacacatacacacacacatacagatacacacacaaatcatacaGACAACATTGCTGGAACAATCAGAGAGAACAAACCAACAGCCAGTTGTCTATATGTAGATATACAAgccactctcacactcacacacatagaAGTGAGATGTAAATGATGCAGAAAGAAAAGATGAGTACCTCTCACTCTTCATGCCTTTTATTCATTTCCGCTGTCTCGATACATATCGTACACGCTTCTTACTCAATCTATCGCTTTCACTGCTTcccttctgtttctctcttcctctcattGACACTAAAtgtatacatgcatacacacactgatacctACACACAATGAAGACACAAGCAGAACAAACAAGTACACACAATACATGCACGGACACATGAATGGATTGGAGTCACATAAACAggcacgacacacacacacacacacacacacacacacacacactgtcatcaGTTAAACTCTGGAACGGGTCTAATCTCGCTCGGGACCTCTCTCAGTCCCAGTGTCATGTCCTCCATTCGACTTACACACTCTCCCAAAAGATGAAGCAACATgctgaaaatgatgatgattatgaagAATTATGATGAAGATAACTCTGTAAAAGTAATGGTTATAATGTTCTTATTACAGCTTATTCTATAAGTAACACTTCTATTGCTATTTCAActgatgtttttatatatacatatatataaatatatatataaatataatatctatGTCCGATTATAGTGTTGGTGGGGGTATTCTAGTGTAGCACCTCTTAAACATGACAAAAGTATGCTGCTAGACTAAACTTGTTCTGATGTGAAGACAAAACATTACACTAGTCCGTTCTTCTTCTGgggtttctttaaaaaaaaaaaaaaacatccaaaatgtATTACTTTAGCAATATTCTCATCTACTTTGAATGTGTGTCAGCAGTTTTCTTTGGAAACCATACCGCCTACTTCAGTACACATAGTTCTAAAGATGGGGTTGATattttgttgattgttttaatttttatttttgtataacagtttGGCTGttgatatttattaatatttatttcatattgtgACCATCTTGGAGCAAAAACTTGATGAACAAGACTGGAAGTGACCGTATGCTTGGGCGTACTTAAGTCTGGGATGGATTGTCAATGTTTTGATGTTGGATGTTGGTTCTGTACCAGCATATTCCATGACTTTCCTCTGTtttcctctgaaaaaaaaaaaaaaaaaacaagaaaggtGTAGAAAAACCATCTCATTTTGTTATTGATTTTGTAAAAGGTGCAGTTCATTTCCCCATACTTCCTCCATTGAGAAGGGTTAGATGTGAGAGAGTCAGTAAGGCACTCAGTAGAGTAGAGAGAAGGCAATACATGAACTGGAGCTGTAAGCATAAGTAGCACCACTTCAACTAGAATTGCACTGTCCTcttgatgttttgtgtttaaatatagCAATGTATTTTTGGGGGACCAACGGCTTTGGGAtatgaatgtataaaaatatgggatataaacatgaaaatgtctGTTGAAGTGCTTCAAATGGAGAAATGAGTGTTATATGTCGTTATTCGCgaagcacacacaaaacagagaagaaaaaaaatggctacCTCAGAT

Function

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 6051 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 13433 16758260 ~ 16763461 (+) False LOC113539905
TU78081 lncRNA downstream 531481 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 553322 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 554470 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 598543 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 598543 17402559 ~ 17403855 (+) False G65927
XM_026937051.2 mRNA upstream 65 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA upstream 65 16772399 ~ 16776829 (+) False batf2
XM_026936987.2 mRNA upstream 21487 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA upstream 21487 16752820 ~ 16755407 (+) True sb:cb1058
XM_026935935.2 mRNA upstream 26770 16746698 ~ 16750124 (+) True b3gat3
XM_026936126.2 mRNA downstream 7384 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA downstream 11782 16815798 ~ 16818534 (+) False zgc:101765
XM_026936125.2 mRNA downstream 11835 16815851 ~ 16818534 (+) True zgc:101765
XM_026936432.2 mRNA downstream 21192 16825208 ~ 16920946 (+) True exoc6b
XM_026936966.2 mRNA downstream 135445 16939461 ~ 16960809 (+) True LOC113540460
XR_003404112.1 other upstream 15019 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 15247 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 15556 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 15787 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 16075 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 805688 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 960445 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 1196142 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 1309428 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 1393296 18197312 ~ 18208564 (+) True G66492

Expression Profile