RNA id: XM_034303739.1


Basic Information

Item Value
RNA id XM_034303739.1
length 5587
RNA type mRNA
GC content 0.44
exon number 36
gene id LOC113540597
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19170699 ~ 19327377 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtgtgaaCGGACCGTGTGGAATGCATTGCGCTCTTCTCGGCGCGCTCAGACCCTCGTGCGCTTTAAAGCTTTGGCCACGCCGCCTGTCCAAGTAGGGATTCGGAACGCCTGGCCACGCCATCTCATTGATCCTTATTTTTGTCCAGTATATCAACTAGCTCCCAGAAGCCTCCGCGAATCAGCCGCAGGTTATCCGGTTTTCAGACTGGGTTTGAATGAGCGCGCGCTAGACGGAGCTGCATGCGCGCGGACACGGACGTCgctctcagttcagttcagttcagcacGGGACGCGTCGAAATAACACTTTCAGTGCTTGTCAGTCATTCTGCTCCTGTCTCTGCATGGTGATTATTTACACAGTATTGCACGGTTGAAAGAGAGTTATGAAGGCTTCAGAAGCCCCAAACCAGTCCAGGTGCGCTGCGAAAATGGAGAGCGACTCGAGCTGCGGCGGAAAGCGGCATTACCTCAAAACCATCACCGGTGCGATCCCGTTTGTTTTCTCCATCGCTTCTGTCGCCTTTTGCATCCTCCTGGGGATTCAAAGCAGTGACCTAAAGAACAGAATGCTCGATTTGGAAAGCAGCAATGGAGAGCGCCTCTCACACCCGTTTGCTGAGGTTTCCATAGACGAGTTTAACTCAATGGTACAGGAGAGAGTGGACGAGGTCCTGGCACAGCACTCCTATGAACATTTTGCACGCATAAGGACTGCACGTGAAGTCTCACCTGACTGCAACTGCCCACCAGGCCCACCGGGAAAGCGAGGAAGAAGAGGACACAACGGTGAACCCGGACCCCCTGGTCCACCAGGTCCGAAAGGTGAGAAGgGAGATCAAGGAGACCAGGGACCGCGGATGGTCTTCCCTAAGATCAATCATGGCTTTCTTTCTGCTGATCAGCAGCTCATTAAGCGTCGGCTCATTAAGGGTGATCAGGGTCAAGCAGGCCCTCCAGGACCTCCTGGACCTCCTGGTCCTCCTGGTCCCAGGGGACCCCCAGGAGACACAGGGAAGGATGGTCCCAGGGGAGCACCAGGGCTACCAGGTGACCCAGGAAGCCCAGGAGAGCTTGGCCCTGTGgGACCCGAGGGCCCTCCAGGACTCAAGgGGTCCACTGGGCCACCTGGCATTCCAGGTATCGACGGATTGAAGgGGGAGGTGGGTATGCCCGGATTAGATGGAATCCCTGGTGCCAAGGGTGACAAAGGAGAGCAAGGTGAAAAGGGTGACATGGGAGAAGAGGGGCCAAAGGGCAATGTTGGTGAGAAGGGTGATGCGGGGTCTTCTGCTGCTGGCATTAAGGGTGAACCAGGTGAACCAGGACGAAGTGGGCAAAAGGGAGAACCAGGACTTCCAGGGCTGCCTGGACTTCCCGGAATAAAGGGTGAACCTGGCTTTCTCGGCCCGCAGGGTGAGCCAGGGCTGCCAGGACTACCTGGAACCAAGGGAGAGCGAGGAGAGCCGGGGCCGCCAGGAAAGGGTGAACGTGGGGAGACAGGCCCAGTTGGACCAAAGGGAGCACAAGGGGAGCCAGGAACACCAGGCCTCAAAGGATCCAAGGGGGACACTGGAGACAAAGGAGATGTTGGACTTATAGGACCCAGAggTCCATCTGGAGAGAAAGGTGACCAGGGCACAACTGAAATAATCGACTACAATGGAAACATCCAAGAAGCGCTTCAGAAGATAACCACTATTACAGTGACGggTCCCCCTGGGCCTCCTGGACCAATTGGACCACAGGGCATTAAGGGTGATCAAGGTCCTCCAGGTCTTCCAGGCCTTGATGGAGAACGgGGTCACAAGGGTTCAAAAGGAGACATGGGAATGCCAGGAATGTCTGGTGATAAGGGATCTGTAGGATTGCCCGGGCTACCAGGCTTCAATGGtcagaaaggagaaaaaggtGATACTGGCCTGCCTGGACCTCAAGGACCATCTATTATAGGCCCTCCTGGGGCACTTGGTCCACATGGTCCTCCTGGTCCAATGGGCCCACATGGATTCCCTGGACAAAAGGGGGAAGCAGGTTTGCCTGGTTTGAAGGGAGCACGCGGGGAGCCCGGGCATAAGGGTGACCGTGGACCCCTGGGCCTCCCCGGAGCGTCTGGCTTGGATGGCAAGCCGGGACTAAGGGGTACAGATGGCCCAATTGGTGCTCCTGGTCCTGCTGGTCCTAAAGGAGATAGAGGTGAGAAAGGTGTTACAGGTGAACCTGGACCAAGAGGACCGTATGGATTACCTggTGCTGCTGGGACACCTGGCTTGGATGGGCCAGATGGATTACCAATGCCTGGCTGCTGGCAAAAGTGAACAGTCTAACTCAAACCGCATGGAATTTGTAAATAATGCTTCATTATTGTATTTATAGTTTGTATTTTGAAGTGTGAAGAAGAATATAAATTGatcttaatataaatatgtgtacaCTGTGGGGTAAAAGCTAAAAGATCATGAGCCTCACCATACCCAGCTGCTTCTACTCACCCTTGTGCTGTCATGGTGGTGTGTGTCACATTCACATAAGCATTGTGGAGTTTATATCATGTGTGTGACCCACCAAGAGACTCTAGAACGCAAGGACAGGATTGCATGGTCCTTGGGAAAAGAGTGGATACAAAAATGGACTAATGAGGTGCAAGGAAAAggtggaagagaaagaggaggcgATGGAGAGATCAGGACTTGCTCTCGATCTAAATATCTATCATCCCATCATTTCATACTACCAGCTCAAAGACTAAAGACTGTCCACACAACCTAAAATAAGCATGTATATATCACATTGTGCTGTGATCAAAATGCTATGGCTTCTGCAGAGCACTAACCGGCTGTTCTTACTTTGTCTAATAAGGAATATTTGGCCCAGcggtttaatttactttttgtCATCTTCTCAAGGGAGTCACACCTTGGCTGGTGGCTTGAGAGAGTCATTTAAGTGGAGGTAGAATGAGATTGTTGGTTTCCTTTATTGTAAAGAGGTCAGCCCCTTCAGCACCTCGGGATTTCACTCCCCGAGCGCCGTGACTTATTGAAATGAACAACGAACTGTGATCGCAGGATGAGTGGAAGAAAGAGACAGCTGCTGCACTGTCTTCATCTAATCCATGGCAGATCAGAAACTCCAACCTAAATGCACTTTACTGGAGTGGGTGTGTGCAAAAGGATGGAGATTTCCAACACCAGTCCCATCATCAGGAATGGCGTCTCTGTATTCTTCTGAAATGGAACACTTGATGGGATCTACTGAGGATGACGcgatgacatttttttgtttttaaaaaggtttctttatacacacacacacacacacacacacacaaatatcacacacacacacacacatatctcagTAGTAACTCAAGTCTTTTGTTATTCAGTTATTGTCATTCCTTTATTGTAGGCATTTActttgtgttttgaaaatgtttcaCACAGAATGAAGAATTCCGAAATATACAATATTGCAGctgatgaaaaacatttttaaaaaaacattctgtttatATGTCACAAGCAGTTGGTGACACAGAAATAcaggtttttctttctctgtatcgTTTTTATGGTTTTAATATAACTGATGTTCCTGCATGTTAAGGTTAAATGAAATAGTGTCCCTTGCTCCTGTAAATTTTGACAACTTTTAAGGAGTGCGTGTTTTATTCTGAAGCAAGCGGTTATGTTAGTCATCACTCCGGATGACATttaagttgttttatttctataatttgTGCcagaatatttttacatttacaaaaatgtagATTTACACAAATGTTTCCAATCCAGTCAAAGTTCCAGCAAACACAAGGGGCAGCActgacagagttttttttttttttttttttaaacttcattaATGTTGTCTGCCATCAGTGATATGTGCTATAACATTCCAGAGCCGTTAGAAAGTTTCTGAGAAATACAGCCCTGCAGTCCTGTAGTATTGCATTAGCCATGTGATGACAGTCATATATACACTTAAGCTGCACTGTGTTTGATGGAGCAATTGCCTTTGACTGAGTATGTATTGGCATTTCTGAAAGGTCTGTTGGGCagttcattttgtgtgtgtatttgtatatacagtttatattcAAGCTAACTGAAACATTTGCATTAGCCTTTATACTTTTAAGTAATGCAATGTTTGTTTTATACTTAAGCATATTGCTGGAAAACAGAGGCATTCCTTGTAACATGAGGTAGCTTTGAAGGTCTTTTTACCTTTCAGTATTATTCATGTATGGTGGCGTTCTGCACTGAAATGCGAGGCAATATGAATGGACGTAATTCTTCATTATGcttcaaatgcttcaaaacttcactcatttgaatcatttgaatTAAGCGTTGGTTAACGTGGTTGCATTACACCATACTGCAGCACAGTTTATGCTGGGCTGCTTACTTTCAGTCATATATTAAACAATCACTTTTTTCTTGCTGTTAGTCATTCTTTAAGTCAAAAAAAGGATCGATAAGTAAGAATATGCCACATGCAGTATTCACAGGCTGTGTGTAATATAGTCCCACTCCCTTTCTCATAATTATTGTTAATTGAATGTAGAATAATTATATGTAtaatggactgtgtgtgtgcagttaaatATTTGCTCATTAGACTAAAAGTGCAATTTATACTTTTCTTGTACAGTATGTATTGATTTGTGAACCATATTCAGTATATGAATACAAATGTCAATTACACCCATTTACTGTAAGTTATAAGAGTatattttaatcacttttaCATTGGCACTGGTGATTCCAACGGTTTCCAAGAGTATAGTGTGGATGTGAAGAAGGCTCAATGTTGAGCCAgtcatattttctttattttgattcAGATATGGCAAATCCTTTTTGTTGAGCTGTCATTTTACACTTCATTTTGAGAGCGTGAGAGCCAAATGCATCTTctgttcaatttttttctttcaatatttGCATAAAACACTTTCTATACATTTCAACATTGGTGCTgtttaaatacatacattttgttgttattgttgtttatttacttgGTGTCATAATATGTTTTGAAAATTCCACTTTTCATAAATGGTTACTTTTGCCTCTTTTTTGTGTCTGGAGTTTTGTCTAGTACTTTCTACACTATTTAGTTTACTTTTTTCCAGAAAGCACTAGGCaataatttaattgtttttttgtttgtttgtttttttcttttaaatatgaaaaacacatttggaTGAGATAAATGTCATGATGATGTGTTGATGGGTTTCTTGTAAATAATGCATATGATATTGGGTCTGGGATTTTTGGTCATTTAGCAGAATTAAACTTTACAGATAATACATCAGTTCCATTTGCAggaccacctctctctctctctctctctctctcttgttttactttttattgatttttattcattattcattattcatgtcctgatttaaaagaaaaaaaaacttgttcatTTTCTAATTTCTTTAACATGATTTTCCTCATGTTGTTAATGAGTGTCCATAAAAGGCTCAATTCATTTCAAGTACGTTTATGTGACAGTGCTGTTGAGCCAAATAAACTCCTCTAAATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79518 lncRNA upstream 48075 19120859 ~ 19122624 (+) True LOC113540244
XR_003404012.2 lncRNA upstream 48679 19120838 ~ 19122020 (+) False LOC113540244
TU79287 lncRNA upstream 259302 18911057 ~ 18911397 (+) True G66887
TU79288 lncRNA upstream 260211 18909646 ~ 18910488 (+) True G66888
TU79255 lncRNA upstream 307282 18859204 ~ 18863417 (+) True G66865
TU79640 lncRNA downstream 18467 19345844 ~ 19351904 (+) True G67205
TU79644 lncRNA downstream 18467 19345844 ~ 19351904 (+) False G67205
TU79647 lncRNA downstream 46179 19373556 ~ 19375720 (+) True G67208
TU79649 lncRNA downstream 55176 19382553 ~ 19451392 (+) True G67209
TU79674 lncRNA downstream 147118 19474495 ~ 19475474 (+) True G67227
XM_034303649.1 mRNA upstream 216699 18951047 ~ 18954000 (+) True ppp1r15a
XM_026936168.2 mRNA upstream 319119 18849165 ~ 18851580 (+) True sod3a
XM_026936118.2 mRNA upstream 740340 18426358 ~ 18430359 (+) True gba3
XM_034304071.1 mRNA upstream 926902 18221624 ~ 18243797 (+) True sec24d
XM_034303316.1 mRNA upstream 1027068 18113473 ~ 18143631 (+) False frem1a
XM_026937227.2 mRNA downstream 654 19328031 ~ 19338707 (+) True etnppl
XM_026936566.2 mRNA downstream 27003 19354380 ~ 19372755 (+) True trmt44
XM_026937115.2 mRNA downstream 61228 19388605 ~ 19393118 (+) True gpr78b
XM_034303203.1 mRNA downstream 66778 19394155 ~ 19405210 (+) False LOC113540663
XM_026937261.2 mRNA downstream 66783 19394160 ~ 19407627 (+) True LOC113540663
TU79253 other upstream 312047 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 962135 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1040194 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1159737 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1406165 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 500934 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 501442 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 773648 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 820418 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 1025037 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile