RNA id: XM_026937187.2


Basic Information

Item Value
RNA id XM_026937187.2
length 5640
RNA type mRNA
GC content 0.49
exon number 12
gene id gpr158b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27585574 ~ 27619191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAATTTTTGCGCCTCTCACATGCAACCGAGCCTTCACTGTGTTTGTGCctgaagagaggagaagagaggagaagagaggagagatgaTCCTGACTGGACCTGCATCATGGAGCGCAAACTGAAACCGTCACAAAGGATTTACATGTGGAGTGACGGCGAGGCTGCACGCGCGGTGTAACGGGATGACACTTGTCATGAGCGCgaggattaaaaataaaaataaaacaaaataaaaaagacctCAGAATGATTCTTGGAGTTCAGCAAGCCACGCATCTGTCTGTGAGGATGCGGGATTCGTTGTAGACGCGCGTGCTTGGGGATGCACGTTTGCATAACTAAACCCGTTTAGGATGCTCGCGCTGAGGAAGAGGATTTAAGAGCGAGCTTCTTTCCGGCGGACGCGGTCATGGGTGTGCTGCTGCTCTGCCTCCTTTTGCACGCGGGACTGGCGCGCGCCACGCACGACGGCTACGTGGAGTGGTCGGACGGCGGTgacgacgacgacgacgacGCCGCCGCCACCGCCGAAATCGGCGCGAGGCAACACCGCGTCCGTGGCACGGAGCGCGCGACTTCGGCGGGAGCCGGGGCGGAGGAGCTGCCGCGCGTGGTGGCCGCCTTCCTCCACACGGGCGACGCGTCCGCGCTCGCGCACGTGAACTGCTCGCGGCGTTACGAGCTCAGCAGCCTCGGTTCCGCTCCGCCGGCGCCACCCGTCGCTTCCGTACACTCCGTTCGCGCAGCGCTGGACGCCGTGTCGCGCGCCGCCGACTTCCTAAACGCGCTGGCGCGAGAGGCGAAGCAAgaagagcagcagcagcggcagcagcagcagcagcaggtgtgGTATCGCGCGCTGGTTCGGAGCATGCTGGACCGCGAGCCCAAGATCCACCGCGCCGCGCTCGCGCTCCACGCCGAGCAGCTCCACCTCCAGGCCACCAGGATGGACGGGCACGTGGAGCTGCGAGAACTTCCGGTTGAGGAGTCCGAGTGGAACCGCCAGGTCCGGAAAAGAACCCAGATGATAACGCAGACTCGAAGCTCCCAGAGCACACAAGGTCACGTGCAGTGGTCCGCGCCGTATCTGGAGTGTGAGCGCGGGCGCTTCATCCCGCACTGGCTTCTAACGCTGTCGGTGAAAGTGTATGAGCTGAACACAGAGCCAGAGATCAGgGGCGTGGTAAGGGTTGATGTCAATCTGCAGGATGTGGACATTGATCAATGCTCCAGCGCTGGCTGGTTTGCCGGCACTCACCGTTGCAATCTGACCACAATGGAGtgTAAACCGATTCCAGGCCACGGCTTCGTGTTGGACAAGTACAAGTGCCAGTGCAGGAGGGGATTTTACCAACACAGCCGAGTGGCACTCAACGGCTTCTCCAAATTGGAACGGGATCATTATGTTGGGGCCGAACCCTCCGACGTGCCGGCTCGCTGTCTGCCGTGTCAGGATGGCTGTGTGTTCTGTCGGGATGATACGCCGTGTCTGGCGCAGGAGGATAGCATCCTCCGCCTCGCCGTTGTCTCGTTCCAGAGCCTGTGTGTGCTGCTCGACTTCATCTGCATGACTGTGGTGTACCGCTTCCGTCGCAGCAAGaGAATCAAAGCGTCTGGTTTTATTCTTCTTGAGGCCATCCTGTCAGGTGCCATGCTCCTCTATCTTCCCgTGATGGTACTTTACTTTCAACCGAACGTTCTGCACTGCATTCTCCTGAGATGGGTTCGCCTTCTGGGCTTCGCTACGGTGTACGGAACGGTGATCCTCAAACTCTTCCGGGTGTTGAAGGTGTTCCTGTCACGTACAGCCCAGCGGATCCCTTACATGACCAGCTGCCGTGTTCTCCGTTTGCTTGGTGCCATATTGCTTGTAGTGCTCTGGTTCCTGGTGGCCTGGACATCAGCTGTGTGCCAGAGTCGTGATACTCATCATGGACTCATTGAGGAAGGTGTGACGCTAGAGGGTCTGCAGTTCAGCATGTGCAAGCTTGACCGCTGGGACTACATGATGGCTGTTGCTGAGCTTCTCTTCCTGCTGTGGGGGGTCTACCTGTGCTATGCCGTTCGCACCGTACCCTCCGCATTTCACGAGCCACGCTACATGGCAGTCGCCATCTATAACGAACTCCTCATCTCAGCCATATTTCACATCATTAGGTTCACCCTGGCTTCTGGCCTCCACCCAGATTGGATGCTGATGTTATGTTTTGTTCATACACATTTGACGGTGACAGTGACTCTGGGATTGCtgctcatcccaaagTTTGTGTTCACTGGTACTCACAGGCAGGATGACATCGCCACTGAGGCCTATGAGGACGAGCTGTACATGGGCCGATCTGGCTCCTACTTGAACAGCAGCATAAATTCTGCCTGGAGTGAGCACAGTTTGGACCCTGAAGACATAAGAGAGGAGCTAAAGAAGCTCTATGGCCAGCTAGAGATCTATAAGCGAAAGAAGATGATGGCGAATAACCCTCATCTCCAGAAAAAACGCAACTCCAAAAAAGGCATTGGACGTTCACTTATGCGGCGCATCACAGAAATACCCGAGACAGTGAGCCGTCAGTACAGTCGAGAAGACAGGGACGGAAGTGAACATGGCAGCAATCGCAGTACCCTACGTAGAAACCCATTTGAAtcttcccatggtggaaaatcCAGAGAGGACTCTCTAAAGAGTAAGGTATTCTCCTTGAAAAGGTCCCATAGCTATGACCATACACATGACCAGGCGGGGAACACAAATGGTGTTCCGGCTGATAAAATGGACAACTCTACAACTGAGTTGTCTCTGCTGGAAAGCTTAATGGGGAGAAGGTCTGCAAAGAAAAATCCAGAGGTACCAAAGGTCGAACCTGCAGAATCTGCAGAGTCGGTGCCACTTGTGTGCAAGTCCATCAGCGCACACAATCTTGCAGCAGACAAGAAGCCTATGCATCTCCGGTCCTCGATGATACAGAAGTCTCTGAGTGTCATAGCCAGTGCCAGAGAGAGAACCCTGGGGCTTGCAGGGAAGACCCATAGTGTTGAGGACGCAAGTAAGAAAGGGCTCAAGGCCAGAGACACCAGGATGCTTTCAGAAGTTGACGAGTCTCCTGAATGCTTCCCAAAGATGATCATCAGCCAATCTGTCGAGTACACCAAGACCCCAAGCAAAATGGGCATCATGAAGCAACAAGTGAGCGGAAGTCAGCCTTCAATTTGCTCTGAACCAGGGAGAAGCAAGGACCTTTATGACCTTTCAGAGGTTTGCCCCTGGGAAATGGAAGATTTGCCCATTCTGTCAGAGGGGAAAGCTCAAAAGCATGTTTCCATTGCCCCGAGTGAGACTAACATGATTCATGAGAGCAGCTCTAAAAGTGGAAAGTCTCAACACAAACAAAGGATGGTGGTTCCATCTCCATCAATCCGCCACCGTTCCAAAGATAAGGGTGGTAACAGAGAGGAAGGGAGTGACAAGAATgatgggaggaaacccaaaACACCACTTAACCTGAATGCCTACAAAGCAGAGGTCTGCCCTTGGGAATTTGAGGATCCATCTTCCAAAGGAGCTGAGACCCTTGACAGGACTAGCCGCAAGAAAAGTGTCACTCCGACAGATGGAAAGCCCAAGATCATCCTCTCAGACATCTCCAAATCCACTGGAAGCCTTCTGCAGCCTCCAGCCCTTATGGTGGACATTTGTCCATGGGACTATGACCAACCACCATCTCCTAACCAGGACAAGACCTCAAGCCCCACACATCATTCAAAGAGAAGGGACTCTAACTCAAAAAGAAAAGGTTCTTGCTCATCAAAAGGGAAGGGGAAGGATAAAGAGGACAATAGCCAAAGATCCAAAAGCAGGGAGAGACGAAGCTCTTCCAGTAAACCTTCTGAGAAACGCCGTGTCAGCCAGACATCAGAGAGTGGCCAGGTTAACCATGACGCATCTGGTAGAAGGAGAAGCTCGACAAAAGAGGTTGGAATCACTGATTGTAAACATGCTGCAGTATGCCCTTGGGAAACAGAGTCTATGCCAAGTGTCACCACAAAGGATGGGGACCTCCACAAAACATCTCAATCAACTGCACCAGCTGCTAGTAAATTCAACATGGCTGAGGTTTGCCCATGGGATTTCGATGATAAGACATTAGGGAACCATGCATGACACAATTACACACTTATCAGTGAATATTATGCTCTCTAGATTGGATTCCTGAGATGACGGAAGGTGACGTGAGAACTGCCTTATGTTCACTTGTctcattacagttttcaaaaGCCCATCTCACACTAAAAATTTGCCTCAATCCTGAAGATTAACTCCCACTAACCTACTGCCATTTTGTTTACATGAACCAGTTTGACCAGTATAAATGACCTGAGAAAGTGTTGGAACATCCTTCTACCCTGTTGCAATATAATGGCTTTGAACCCACTTTAAAAAAGTGCTTTCACATATGTAGTGTTTAGCTGGTTTGAATGGAACACTGGTATGTTCTCATCTTCAGTGAGAAAACAGTCAGGCAATCACGCTCGGGTCTGAGAGTGTCATAGCAAAGTGGTCTCAGTATTGCTTCCAAGTGTATTCTAGTAAGAAAGCAATTAGTCTCTGAATcaacccaaataaataaaaagagaaaataaacactggcCGTGATACACAAAGTGTTTTTTAGTCTAATTCCCTGTTCTCCATGCTTGGgtaatttttgtgatttctaaagGTTTGTTTACATTCTTCCCTAGCcatatgaggattttttttagcaCTACATGCATCTCAGCCAGCATTTGTTGGATGTGAAACGAAATAGCAAGCGAAACAAAAGTATCAAATTTCGCTCTCAACAAGCAGTCTACATGTGAAAGCATCTAGAGAACTGCTAAAAATTTCAAAAGCAAGTGAAACAAGAGCACAAATGTCATCCTGAAGTATCACACAGTGTcttttaaacactgaacaacCCATAACTCTGACATTAGGATGGTCTAAAGAGCTGTTTTTGAATGGATAATAAATTCGgcttgatttaaaatgaaattgcaTAACAAGGAAAAGGAATGATGAAAGGCAAATATCTTACCAATTCAGTGCACAATGTTTTGATCTAGTTAATCTAGTAAATATATAGCCATTTTTAACCAAAGAAAATTTAACATATTCAGCATCTGCTAAACATGCATCTTCCcacaattaaatataaatttctaGCACACTCAGAACACACAGGAAAGTCGTATATTTCTTCAACAGGAGAgcacaacatgttttttttggtgGGGGGGATTGCATGGATGAGTGGCTTGGTTGCATTAGTGTTGATATCGTTTTCCCTTTACTCCCACTTGAATACTGTAGTGTTGTGATTTTGCATCAGTATTCTCTGCTGTAATAACACATCGTCACTCAAGTGGATATTTATCTCTGTATCCTATGAAACAGTGTTCCAGTGGTTCTGCATGACCGTGAATAAACAGAGTCCCTGATTTCTCGTTGGGTTCTTATGAAACACCCTCGATGAAAAGACGCTTCCCTGAGCAAGCTGGTACATCCAGCCTGTGACGTTTCTATTGTATGTTTATATCGTGCTTGTCTGTGATGGCATGTACAGAAAATACCTCCAGCCTGCAATAAACATTTCAT

Function

GO: NA

KEGG:

id description
K08469 GPR158; G protein-coupled receptor 158

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85461 lncRNA downstream 107908 27474765 ~ 27477666 (-) True tsen15
TU85454 lncRNA downstream 140460 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 178755 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 182939 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 298876 27286239 ~ 27286698 (-) True G71955
TU85956 lncRNA upstream 260347 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA upstream 275322 27894513 ~ 27970795 (-) False G72517
TU86050 lncRNA upstream 293679 27912870 ~ 27958488 (-) True G72607
TU86051 lncRNA upstream 355279 27974470 ~ 27980336 (-) True LOC117597146
XR_004578040.1 lncRNA upstream 357887 27977078 ~ 27985856 (-) False LOC117597146
XM_034303959.1 mRNA downstream 29587 27547823 ~ 27555987 (-) True pcyt1aa
XM_026937162.2 mRNA downstream 29588 27547823 ~ 27555986 (-) False pcyt1aa
XM_026936170.2 mRNA downstream 54484 27521690 ~ 27531090 (-) True anxa13l
XM_026936469.2 mRNA downstream 90647 27484777 ~ 27494927 (-) False acbd5b
XM_034303665.1 mRNA downstream 90777 27484777 ~ 27494797 (-) False acbd5b
XM_026936536.2 mRNA upstream 85090 27704281 ~ 27839097 (-) False dpp6b
XM_026936534.2 mRNA upstream 85090 27704281 ~ 27814268 (-) True dpp6b
XM_026936537.2 mRNA upstream 85090 27704281 ~ 27791671 (-) False dpp6b
XM_026936535.2 mRNA upstream 85090 27704281 ~ 27775870 (-) False dpp6b
XM_026936538.2 mRNA upstream 85090 27704281 ~ 27775807 (-) False dpp6b
XR_004578066.1 other downstream 29588 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 152896 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 189351 27396151 ~ 27396223 (-) True trnat-ugu_4
trnat-ugu_3 other downstream 190145 27395357 ~ 27395429 (-) True trnat-ugu_3
TU85245 other downstream 381388 27203783 ~ 27204186 (-) True G71909
trnat-ugu_7 other upstream 1865 27621056 ~ 27621128 (-) True trnat-ugu_7
trnat-ugu_9 other upstream 5545 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_003404039.2 other upstream 396873 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 616995 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 617533 28236724 ~ 28236805 (-) True trnas-uga_2

Expression Profile