RNA id: XM_034303197.1


Basic Information

Item Value
RNA id XM_034303197.1
length 3297
RNA type mRNA
GC content 0.45
exon number 8
gene id si:dkey-154p10.3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24161778 ~ 24170467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAACGGCAAACATAGGAACCGTCTAAAAAATACGAAACCATTCCGAATAGCCAGCATAGTTTCTAATAGTAAGATTTCAATATTTATACAAGAGAAGGGAACTTAATTTAcattgaagtgaagtgtggaCATTTTGGGAGTTTTACTATGCCAAAAGTCTGGTCAAGATgaaaagGTCATAGTATGGCTGGGATTAAAGATGCATATCAGCTCATAGACCCTGTAACGCTGAGACTCGGAGAAGAGAGTGTCGCATCCCACCTTTACTGCAGCTCCGTCAAGGGCATTGAAGCTCGTTTGTCCACTTTGGTAGAGGCCTTCTTGGTTGAGGTGTTTCGCTGCCGAGTGTGCCAATTCACCAGCAGTCTGAAGACTAGGATCTGCAGTCACGTCACCGAGAGCCATTCTTCAACATCATCGTCACCATGTCGCCACCTCTCCTGCCTGGAGAAGGAGGATGAGGGGAGTTTGACTGAGCTCGACCAGAACGCCTCTCCTTATGATCTCCATTCTGGCTCCAAAAATGGCGAGGACCACATGGACATGGACCGAATGTTCCTGCTCCCAATGTATGGCATGCTGCAGAACATCAGCCCACCGCCATGCGATATCAGTTTGAGCGCCAACTCTGACAGCAACCTTCATGTGGCCCAGACGTGCGAGGTGAGCACTTTGTTTGACGAAGACAGACACAGCGAAGAAGAGAACGTCTTCCAGCTGGAGGATTCCAGCCATGCACTCCAAGGGCCCCTTTCTGCTGAAATCACCTGTGCTGAGGATGAAGAAATGGCGCAGTCTGCTCATTTAATGACCCTTGGCTTGTGCAGAATCTCTAGTGCCAAATGTCCCTCTCAGCCTGCCGCCTTGTCTGTGCCTCCAGGTGGACAGGATGTCTCAGAGACTTCCCTGGAAGACAAACAACCCCTTCTTACCACATCTGAAATACAAAAGCAGGCTGAAGAGGAAATGGGGCTTTCCTGTGTTTTCTGTCAGGCAGTCTTGGCTAACCATAGCCTGCTAGAGGTGCACCTGAAGTGCCACGACGGTGAGCAGGGCTTCAAATGCCCACTCTGTGGCCGAGCGGCAGCAGACTGGGCCGATATGGAGTGCCACTGGAGGAGCCATGCAAGAAGGAGGTCTAAACACCACAAGTGTTCTTTTTGTCCCAGGACGTTCAGGAGAGCAGATTTGTGTGAAGCTCACCAGAAGAGGCATAACCGAGCTCGGACTAAGCCTGCTTCTCTGACGCAGTGCTCCCTGTGCTTCGAGTGGTGCCGCCCGGGGCAGGAGTGGGAGATGCACCAGCGCTGCCACTTTCAGGGAGGGTTTAAGTGCTTTTACTGCAATTTCACAGAAAAAGCTTGGAAGAAGATGTACAAGCACATCCtcaatcaacacacacaggTTGACGGAGATTCACACCACAAAATATCCTACAACATATCACCCCTGAAGTTTGATGCTCAGATGTCAAACAGTTACTCCAAATGCCTTGGAGATGTGCAAGCGGAGTCATGGAGACATGTGACAAAGATGAGCGTAAAACACGAGGTTGTGGGAAAGAAGAAGAGTGACAAGGACAAAAGGGACTGTGTAACAGCCACCCAGCAGGAGACGAGTGTGGGATTAAAGGCCCCTAAACGGAAAGACTTCTGCTGCGCGCTTTGTGATAAAAAATTTTCCACCAAGCTGACCATGCGGCGTCACATGGATATTCATCAGGGGGAGAAGCCTTTTAAGTGCCCTCGCTGCCACTACAGCACCAGACTGAAAGCCTCACTCATCCAGCACATGCGTGTCCACACAGGTGAAAAGCCTTACAAGTGTCCCCAGTGTTCGTACGCCTCCATCGACAGGAGCTCTCTAAGGCGACACTCACggacacacactcaggaaaagCCCTACTGCTGCCAGTACTGTCCCTACAGCTGCATCCAGAAGAAAAGCTTGGACCTCCACTCACGGCGGCATCACACTGGAGAGTCATTCCCATGCCCACTGTGCCAGTACTCAACACCGGACCGGCAACTGTTGCTgcgacacacacgcaaacaTCACACCTCTGAGAACTCTTCTATACTCGGGCCGAGGAGTGCACCGTCTTCCAAAAGAACCGGAACCTCCAAATAACACGGACTACCAGGGCTGCAATGATTAGTCCGAATAGTTGATGATGTCAGTTAGGAAAAATTGCCTTAACTTGCTTAACCAATGAAGAATATAAGAGAGCATGGGTCTCTATTTCTGGGTGGAATGTAACACTAAGTGAAGCCCCTGGGGGCAGCAGTGGTGCTGACAGTAGTACTGTACCACACAGTGCTACCATGTACAGAGCTGTTTTTAGGCCCAACACTGTGGAGGCAGttttaaagaacacacacaaaacagatcGAAAGATTTCACATACAACATACAGTTAACAGAGCTAAGCCGAACAGAGCCATTAGAGCGAATGTGGAAAAAGGTTTAATATCATTCACACCGAGTTCATGTGGACATGACTGATAGAAAACATGATGGTGAGAGCTGCACTCTCTCTTACAAACACAACTTTCAATGATGGTGGCAACGAGAGGAATTAAAAAAGCAAATCCTTAAACACTTCACGTAAGTAAAAGCATGGTACAATGCAGTCTATGCAAAGCAGAGATGCCTTTCATAACAGTACAAGcattaaaaaatgacagaagCCAAGAGCTCCTGCTTGGGGAGTGGAATATACTAAGCAGTTAATATTACATCTCATTCAAGAGGCTTGGTATTTTCTTTTATGTAATAGTGAAATATGTCTGGCAATTTCATAGATTAATGAGGCAAGTTAAgtttgatttttacatttttagccTGATTCATTTTGTGATTTAATACAGTTTTgataaagagggagagaaaaagatcAAATTAAATCAACAAAAGTCAAAAAGTTAAGGTTTGTGtgctattatttaaaataaatagatgatcaaattctttatttgtaatttaaattggTTGTTATTGTAACAGGGAATAATCATTAGAGATTATCCCTAGAAGAGTCAGTAGAATAAGATGTTAAAAGTAGTTTTTCCTCACagtttttacattatattattgaaaaaaacaataaacaacaatgCCAAATATTTGTTACAGCTTTTCTCATTTATGAGTCACATTTAAGCCAGTTTATCAAAAACTATTTTGCTGATTAGTTCACATGAATAATCGactgttcaaatattttttgtggctCTATAGACTACTAAAACGATATTTGCATTTTGAAGTGGAATCATTTTTAGGTTTGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 22890 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 55555 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 77560 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 151918 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 153115 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 395778 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 396533 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 400181 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 403869 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 412709 24583176 ~ 24583376 (+) True G70139
XM_034303198.1 mRNA upstream 12810 24145082 ~ 24148968 (+) True LOC113540392
XM_026936855.2 mRNA upstream 12810 24145082 ~ 24148968 (+) False LOC113540392
XM_034303200.1 mRNA upstream 12810 24145274 ~ 24148968 (+) False LOC113540392
XM_034303199.1 mRNA upstream 12810 24145279 ~ 24148968 (+) False LOC113540392
XM_026937349.2 mRNA upstream 24970 24134676 ~ 24136808 (+) True ccr9a
XM_026937197.2 mRNA downstream 179 24170646 ~ 24174507 (+) True LOC113540614
XM_026937196.1 mRNA downstream 4791 24175258 ~ 24176754 (+) True opn4.1
XM_026935937.2 mRNA downstream 8500 24178967 ~ 24183754 (+) True tmem53
XM_026936895.2 mRNA downstream 124169 24294636 ~ 24409174 (+) True rnf220a
XM_026936896.2 mRNA downstream 124169 24294636 ~ 24409174 (+) False rnf220a
TU83028 other upstream 51889 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 841435 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2399477 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 688559 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1537360 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1727668 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2058297 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 2117823 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile