RNA id: XM_026937196.1


Basic Information

Item Value
RNA id XM_026937196.1
length 1497
RNA type mRNA
GC content 0.54
exon number 1
gene id opn4.1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24175258 ~ 24176754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAACCTCCAGTCAACTCAGAGTGAGTATCTCTGCCACCCGGGTGATTCTAACTGCACGGATGTGTTCAAGGAGTCCCTGAGTGTTGAAAACTACAAGATGCAGCATGTACCGTCCCATGGGCCGACCCCCATCCACCACAGTGAGTTTCCACACCTGTTTCCTACCGTGGATGTCCCGGATCACGCTCACTACATTATTGGGTCGGTCATCCTCATAGTGGGGATCACAGGCGTAATAGGAAATGCGCTGGTCATCTACGTATTTTGCCGCAGCCACCCACTACGTACACCAGGGAACATGTTGGTGGTCAACCTGGCTGTGTCTGACTTCTTCATGTCGCTTACACAGTCGCCTGTGTTCTTCTTGGCCAGCCTGCACCGGCGTTGGGTGTTCGGGGAGCTTGCGTGTGAACTGTATGCCTTCTGTGGTGCCCTCTTTGGGATCTGCTCCATGATGACTCTAACAGCTATAGCTGTCGACCGCTGCCTCGCCATAACCCGGCCTCTTGCTTTGCTGGGGCAGGTCAGTCAAGGCAGAGCTGGTACAGTGCTAGCCATGGTGTGGCTCTATGCTCTGGGCTGGAGTCTACCTCCTTTCTTCGGCTGGAGCGCATATGTTCCAGAGGGTCTCCAGACCTCCTGCTCTTGGGACTACATGTCATTCACGCCATCGGTGCGCACCTACACCATTCTTTTGTTCATGTTCGTCTTCTTCATCCCTCTGAGCATCATTGCTGCCTGTTACTTGGCCATCTTCCGAGCCATTCGAAAAACCCGGAGAGAGGTAAGACGACTTGACTCCGGTGAGACACATAAGGTGCTCGAATGCATCAAGAGCGAATGGAAAATGGCTAAAGTGGCCCTCTTGGTCATCTTACTATTTGTGATTTCCTGGTCGCCTTACTCCGTGGTGGCTCTCACAGCCACAGCTGGCTACGCCCATGTCCTCACTCCTTATATGAACTCCATCCCTGCGGTGATCGCCAAGGCCTCTGCCATCCACAACCCCATAATCTATGCTATTACACACCCTAAATACCGACTAGCCATTGTGCGCTATGTTCCACTTCTTCGCCTTATCCTGTGTGTTGGAACGAATAAGTGCTCATCCTCCATCTCCACCAGTGGCACCTCTTCTCAGCAGACAGCCCTAACCAGCCAGCATGCCCTGGGTGTCCGGATTGGCAATGCCACGCGTACTAACTGCCGCTGGGGGAAGACACGGCTGTCCTCTGCTTCTGACACAGAGTCCTGCTGGACAGACAGTGAGGCTGATGGCTCGAGCGCCAACTCGCTGCCTTTCGCCAGACGCGTGTCTACAGAGATCTCTTCAGACACTGCCATTCCTCCAGAGCAGGCTGGCATGAGCACAGGAATTGGGCTGAAAAAGGTGAAAGCTGGCAGAGTTAGCAGCATGCCTGTGCCCTCCATTACTCTGGAACCAGAGGGAGGAATGCTTTCTGATGGTAAAACCTTTCTCCTATCAGGTAACTGA

Function

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0008377 light-induced release of internally sequestered calcium ion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 36370 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 69035 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 91040 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 165398 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 166595 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 389491 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 390246 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 393894 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 397582 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 406422 24583176 ~ 24583376 (+) True G70139
XM_026937197.2 mRNA upstream 751 24170646 ~ 24174507 (+) True LOC113540614
XM_034303197.1 mRNA upstream 4791 24161778 ~ 24170467 (+) True si:dkey-154p10.3
XM_026937195.2 mRNA upstream 4791 24161997 ~ 24170467 (+) False si:dkey-154p10.3
XM_026936855.2 mRNA upstream 26290 24145082 ~ 24148968 (+) False LOC113540392
XM_026935937.2 mRNA downstream 2213 24178967 ~ 24183754 (+) True tmem53
XM_026936895.2 mRNA downstream 117882 24294636 ~ 24409174 (+) True rnf220a
XM_026936896.2 mRNA downstream 117882 24294636 ~ 24409174 (+) False rnf220a
XM_026936897.2 mRNA downstream 117882 24294636 ~ 24409174 (+) False rnf220a
XM_026936898.2 mRNA downstream 117882 24294636 ~ 24409174 (+) False rnf220a
TU83028 other upstream 65369 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 854915 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2412957 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 682272 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1531073 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1721381 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 2052010 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 2111536 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile