RNA id: XM_026937200.2


Basic Information

Item Value
RNA id XM_026937200.2
length 2861
RNA type mRNA
GC content 0.55
exon number 22
gene id sf3b2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9627748 ~ 9641910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACGTATGAGGAAGTTCCCATGAGCCTCTGCGCCAGATTTGTGTTGTGTGcggagcggtgtgtgtgtgtgtgtgagggagagaaaaagtaaAGATGGCGGCTGATGGAGTCCCGGGCGCAGAGTCTACCCCGGACCTGAACTCATGGAGCGTCCCCGAGTTACAGGCCAAGCTGGCGGAGATTGGAGCGCCGGTCATGGGCCCAAGAGAAGAGTTAATAGACAGACTGAAATCCTACATGATGCAGACGGGTGTGATGTTGACTAAACCCAACTTGCCGGGTGGAGAGGACAAGCCCATGACCACGATGCCAGGTCTGCCTCCCATGCCGCCGATGCCTTCCATGCCTCTGCCCCCGGGCATGGGTGTGCTGCAGGCCATGAGCATGATGGGAGGACCACCTCCACCTGGCATACGCATGAGCATGGAGCCGCCGGGTGTGTCCTCTGGCATGGGTCAGGACGACCCGCAGAAGATGGCCCAGAGGGCCAGCCAGGGGGATTCCAGAGTGATGGAGGAACAGCTAAAAGAGCAGGAGCTTCTCGAGCAACAGAAGAGAGCTGCACAGCTGCTGGAGCACGAGAGGCAGCAGGAGCTGGTCAAGCTGCAGCAGACGGGACCACCAGGCACCCGGGCTCCAGAACCAGGACCTGCACCCAACCTGCTGCCCCCCATTCCTCCACTCAGAGCCTTGACAACCAGTGGTCCGCCCCCTCCAGGCGTTTCCATGGTATCACAGGCGAGTCAGAGGCAGAGAGTACCACCTCCACCTGGAGAGGACGTGAGAGAGTTGTGGCAGAGTGATGATGTGGGAATCGGGCCGAAGATCCCTCAGGCTCTGGAGAAGATCCTGCAGCTGAAGGAGATCAGACAGGAGCAGCTCACTGCCGCTCCTACAGAAGAGGAGGACGATGACACGGCCGACATGGAGATGAACAGCTCTCGTCCATACTCAGACGATGAAGAAGAAAGCACTCTCTCTAAAAAGGATAAAAGCCGCAGACGCAGGAAccggaggaagaagaagaagaggaatcAAGAGAAGAATGAGCAAGTGGAGGCGAGAAAGAACGAGGCTGAGAAGGACAAAGAGAAAGATCCTGAAGTGGAGATCGAGTACGTGACAGAGGAGCCAGAGATCTATGACCCCAATTACATTTTCTTCAAGAGGATCTTCGAAGCGTTTAAGTTGACAGATGAGgtgaagaaagagaaggagaaggagccAGAGAAGACCGAGAAGCAGGAAATCACCTCGTATAAGAAGAAATTtttagaggaaaagaaagacagcGACGACAGTGACGAGGAAATCAAACCAGATGTGCCAAAACTCTCCAAGAAGAAGCTGAGAAGGATGAACAGGCTGACTGTAGCTGAGCTCAAACAGCTGGTGGCACGTCCGGACGTGGTGGAGATGCATGACGTGACGGCACAGGAGCCCAAGCTGCTGGTGCATCTGAAGGCCACGAGGAACACTGTACCCGTGCCTCGCCACTGGTGCTTCAAGAGGAAGTACCTGCAGGGTAAGAGGGGTATCGAGAAACCGCCTTTCGAGCTGCCCGAGTTCATCAAACGCACCGGCATCCAGGAGATGAGAGAAGCCCTGCAGGAGAAGGAGGATGCTAAAACTATGAAGACCAAAATGCGGGAGAAAGTCCGCCCAAAGATGGGCAAGATTGACATTGACTACCAGAAGCTCCATGATGCCTTCTTCAAGTGGCAGATCAAGCCGAAGCTCACCATCCATGGAGACCTGTACTACGAGgGTAAGGAGTTTGAGACACGGCTGAAAGAGAAGAAGCCTGGAGATCTGTCTGATGAGCTGAGGATTGCGCTGGGCATGCCCACTGGCCCTaACTCACATAAAGTTCCTCCTCCGTGGCTTATTGCCATGCAGAGGTACGGTCCTCCCCCTTCCTACCCCAATCTCAAGATCCCCGGCCTCAATGCCCCCATTCCCGAGAACTGCTCGTTTGGTTATCATGCTGGAGGATGGGGTAAACCTCCCGTAGATGAGACAGGAAAACCTCTTTACGGCGACGTGTTCGGAACCAACGCTGTAGACTTCCAGGCCAAAGCGGAAGAGGAAGAAGTGGACCGAACCCCGTGGGGTGAGCTCGAACCGTCAGATGAAGAGTCttcagaagaagaggaagaggaggagagtgaCGAGGACAAACCAGACGAGTCCGGTTTCTTCACACCTGCCGACAGcGGCTTAATCACTCCCGGTGGCTTCTCTTCGGTTCCCGCTGGCATGGAGACTCCAGAACTGATTGAGCTCAGGAAGAAGAAGATTGAAGAGGCGATGgatggAAATGAAACTCCTCAGCTGTACACAGTGCTGCCAGAGAGGCGAACAGGCCCTGTGGGAGCAGCCATGATGGCGTCCACACACATCTACGACATGTCTGCGgcgGGGGCAGCGCGGAAGGTGGCCGGGGTGGCCGGGGTGTCGGGGTTGGGCGGAGACTCTCAGGGCGTGGAGGTGGCTCTGGCCCCagaggagctggagctggacCCAATGGCCATGACGCAGAAGTACGAGGAGCACGTGCGCGAGCAGCAGGCTCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCTGAGCACGCCGCCAAACAGAAGCAAAAGAAGAGGAAAGGCCAACCACAGGACACTCGCGCCGGAGCCAAGAAATACAAAGAGTTCAAGTTTTAAAGAGGAGACGAGCGTGAGACCACAGATAATCATACcgtctgtttttccttttagcGTCAGCTCTGTAGAAATAAAGGCGTCTATCTGTAAGCTGATGACAAGCGATTTTTCACGTTTCACTgtcttttgtaaataaaatataaacccatgccatttta

Function

GO: NA

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73000 lncRNA upstream 35006 9578364 ~ 9592743 (+) True G61638
TU72958 lncRNA upstream 171589 9449043 ~ 9456160 (+) True G61600
XR_003404086.1 lncRNA upstream 278035 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 284635 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 285777 9341759 ~ 9341972 (+) True LOC117597225
TU73062 lncRNA downstream 239158 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 239158 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 272325 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA downstream 272325 9914235 ~ 9917378 (+) False G61696
TU73126 lncRNA downstream 382675 10024585 ~ 10041759 (+) False LOC113540370
XM_026937204.2 mRNA upstream 193145 9428725 ~ 9434604 (+) True pnp5a
XM_026936309.2 mRNA upstream 294967 9329335 ~ 9332782 (+) True LOC113540089
XM_034303888.1 mRNA upstream 636297 8987729 ~ 8991452 (+) False LOC117597148
XM_034303599.1 mRNA downstream 7394 9649304 ~ 9707936 (+) True LOC113539871
XM_034303600.1 mRNA downstream 7394 9649304 ~ 9707936 (+) False LOC113539871
XM_026936838.2 mRNA downstream 70673 9712583 ~ 9723961 (+) True LOC113540385
XM_026936840.2 mRNA downstream 70673 9712583 ~ 9723961 (+) False LOC113540385
XM_026936839.2 mRNA downstream 70673 9712583 ~ 9723961 (+) False LOC113540385
TU72678 other upstream 731020 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 903309 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1564910 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 3031188 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 3197172 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 116550 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 165411 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 218984 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 218984 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 270487 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile