RNA id: XM_026937204.2


Basic Information

Item Value
RNA id XM_026937204.2
length 1604
RNA type mRNA
GC content 0.45
exon number 6
gene id pnp5a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9428725 ~ 9434604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCATATTGTGGGCGGGGCGTCAGTGATGCTTCTCTATAAATAAACCGGCAGTAAGGCGTCCTAATTAGGATTTTAAACGCTGACATTAAACATAATTGGGTGTTTTAACTTCTGTCTCGGCTTGTTTAACGTTTTGCTTtgagtttttagttttattctttttatataggGTTGTTTGGTTTACATTAGGAGTTGGAGTCATAGTCCTGGCTTACAAATCCGCTACTTTCTTCTGGGACCGATTTTAAAGTCATGTTTCCTGAGAGTCACACTGGGTACAGCTATGAGGATTGCAGGGCTACAGCTGACTGGCTGTTGGCTCAGACTGCAGTGCGCCCACTGGTGGGCATCGTCTGTGGCTCCGGTCTGGGTGGATTGGCAGACATGCTGAAAGATCAAGTGGTCTTCAACTACAGAGACATTCCCAACTTCCCCCAGAGTACAGTGCATGGACACGCTGGACGGCTTGTGTTTGGGACTCTGAAGGGAAGGCCATGTGTCTGCATGCAAGGCCGCTTCCATCTCTATGAGGGATACCCCATCCAAAAGATCACTCTGCCCATGCGGATATTTAAGCTGCTCGGTGTAGAGACTGTGATCCTGACCAATGCTGCAGGAGGCCTCAATCAGGACTTCAAGGTGGGAGACATCATGATCATCAAAGACCATCTGAACATGCCTGGATTCGCCGGCAACAATCCGCTGATAGGACCTAATGacgaaagGTTTGGTGTGCGTTTTCCCTGCATGTCTGACGCGTATGACCGCGAGCTGCAGCAGCTGGCCATGGACGTGGGCATTGAGTTGGGTTACGGTGATTTCCTCAGGGAGGGCGTCTACTGTGTGCTCGGCGGACCGTCATTCGAGACCATCGCTGAGTGTCGCATGCTGCACAAACTGGGAGCTGATGCTGTTGgAATGAGCACGGTTCACGAAGTGATCGTGGCGCGTCACTGTGGAATGCGCGTCTTCGCTCTGTCTCTGATAACCAATCAGGCTGTGATGGACTACGACAGCGAGGAGAAAGCCAACCATGAGGAAGTTCTTGAGACGGGCAAACAGAGGGCCGAGCAGCTGGAGAGGCTGGTGTCCACCATGGTCACTCGCATTGGGCACAATAACTAGTCCTAAACAAAACTTGATTTTCTCATCACTGAAAAGCAAAGTTGATTTTGAACATATGGTCAATTTCAGTACAGTGAAACATTCAGCTTGTCCGAACTGAGCCATCATACTCGTGTTTAGTGCTTTGCTGCATGGTTGTGTGCTTCTATCCTGTAGGTGCAATGTTCTGTGTGTTtcctggtttgtttgtttttgtttttttttttccttcctgaaGTGCACAGAtatcattcatatttattagtGAGATCCTCTGGTCATGTACATTCCTTTATAGTAGTAAACACAAACTGTCAGACTCTAGATGTATGGAAACGTGTCTTAAACCATTCATAATTATGTATATGTcctaattatttaaattcttagtaaattgttgattgttttatGAAAGCCCTATGCTGTACAGTAGATGTATAGATTGTTCATTGTGTGTCCCTTTTTCTAACATTATTAAAGTTgtatatttattactata

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404086.1 lncRNA upstream 79011 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 85611 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 86753 9341759 ~ 9341972 (+) True LOC117597225
TU72883 lncRNA upstream 89983 9337876 ~ 9338742 (+) True G61536
TU72881 lncRNA upstream 93475 9334739 ~ 9335250 (+) True G61534
TU72958 lncRNA downstream 14439 9449043 ~ 9456160 (+) True G61600
TU73000 lncRNA downstream 143760 9578364 ~ 9592743 (+) True G61638
TU73062 lncRNA downstream 446464 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 446464 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 479631 9914235 ~ 9918783 (+) True G61696
XM_034303874.1 mRNA upstream 58240 8784945 ~ 9370485 (+) True LOC113539869
XM_026936309.2 mRNA upstream 95943 9329335 ~ 9332782 (+) True LOC113540089
XM_034303887.1 mRNA upstream 437273 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA upstream 437273 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA upstream 437273 8987729 ~ 8991452 (+) False LOC117597148
XM_026937201.2 mRNA downstream 193144 9627748 ~ 9641910 (+) False sf3b2
XM_026937200.2 mRNA downstream 193145 9627749 ~ 9641910 (+) True sf3b2
XM_034303599.1 mRNA downstream 214700 9649304 ~ 9707936 (+) True LOC113539871
XM_034303600.1 mRNA downstream 214700 9649304 ~ 9707936 (+) False LOC113539871
XM_026936838.2 mRNA downstream 277979 9712583 ~ 9723961 (+) True LOC113540385
TU72678 other upstream 531996 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 704285 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1365886 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2832164 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2998148 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 323856 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 372717 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 426290 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 426290 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 477793 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile