RNA id: XM_026937209.2


Basic Information

Item Value
RNA id XM_026937209.2
length 1611
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC113540625
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31587261 ~ 31594687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTAATTCAACTTCAACACCGTTTAATCTTGACTAGTGTCGATTGTTATGTTTTCttctaatattaattaacatcaGGGTTAGGATCATTTCTGTTTGAGTCAGCTGTACGGTACACAGCACGGAGGTCAAGCGCCAGTGCGCGAATATTACATGCTGCACGGTAGTACAGCTGCAGCCATGACATGTCTCTACTccattttaaactaattttatgCGTGTATATATACACCTAGGACCAAATCTTTACTAAAGATTACAACTTAGACTTATACTACTACACTTCTAAAGTCTTCATATTAAAATTTGACTCAATACCTTACCGAAAATCCTAAATTTTGTTATAATAATGAGTATAGAAATGGCATGGCGGCAGCTGTGGACATAGATATAGTGCTGTTTAATATACTACCGTACACCATGTAATATTCGCGCACTCGCAATTTGGGCCTTAGCCTAGCGGTCTGACAGAAACTCGTTCCTTTGTTTATAAAGCTAACTAGATACAGAGCTAAGTTAGCGAATATCTAAACTTGTGTTGTCAAAACAAAAGTGCTTTTTCTCAGAGGGAATGGATTGGTTTCACTGTAATAACTGTTTTTTGAGGAGAGGGAATAACTTTGTAGTGTCCAGTTGTGGCCATGTACTTTGTGAGAGCTGCATCAAaccaaATCACTGCTGCGTGTGTCAGTCCAGCTGCAGCTACCTGCCTATATCTGACCAGatgaaaccTCAAGAGCAGATGTTCTTCAAAGACCCAATAAGCATCATTCATACCCGACTGGAGCGTATTGCACAGattgCGACATtccagagaaaacagaaagagagagtcatAGCCTTCCACAAACACAAATTTGCGGAGATGGAAAGAAGACTAAAGGAAGTCAGTGAGCAGTGCCACAGGCAGGTGTCAGAGCTCAGGAAGGAGAATGCTGAACTTAAGAAGCCTCTTTCCCAGAGGAGGGTATCCCCTGGGACGTTTAAGGCTAATGGCATTCCAAGAATGACATTACCAGTGGCTGTCACATCCCCAGTCACGCCCCGCTCCAGGACTGTAAGTCGCTCAGGCTCTGGTGAGCCCATGGAGAGGTTTCGACACTTCAGACCCAGCATGGCAtCTCCGCTGGATTCAGCCACGTCTGTTTCCTCCCTGAGTTCACTGAACGAGCATGGATTTAGAACACCCACCTCTGTTACCACACCAATGaggtcaGACCATGTAACGCCGAACATGTTTCAGTTCCAGTTGTTGCCTGGAGCAACATTTCAGTCTCCCCAGCCGTGGAATGTGTAGCGGTCAGGTATCTAACCAAGACACGTCACATCAGCGTGGCTGGTCGCAAACGTGACACCTGTAGATTAGATTTGCAGCCGCAGTGGTTTTCGTGTTCAGTTTGTATATCTCAGATAAGGTGATGGGTTTGAGTTGTGCACTTGTGCAGGTCAGAGACTGTTTGTGAAAGATTTGAAGtaaatggaaatgtgtgtgttgtttcttgtTTATATTCCAGTGCAGTCCTATAAAAAGGGAAAGTTTGAAATTCAGGTTTTGTAGTTCTTATTCTGCTTTTCTGAAGGCCAGTAGAAATCATGCCAGTAAGGTGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578069.1 lncRNA upstream 40466 31544698 ~ 31546795 (+) True LOC117597165
TU88025 lncRNA upstream 54038 31531453 ~ 31533223 (+) True G74309
XR_004578070.1 lncRNA upstream 56065 31524103 ~ 31531196 (+) True LOC117597166
TU88032 lncRNA upstream 59191 31527856 ~ 31528070 (+) True G74315
TU87899 lncRNA upstream 231140 31355554 ~ 31356121 (+) True G74199
TU88103 lncRNA downstream 112551 31707228 ~ 31707436 (+) True G74370
TU88120 lncRNA downstream 139979 31734656 ~ 31743095 (+) True G74384
TU88089 lncRNA downstream 175144 31769821 ~ 31775982 (+) False LOC113540067
XR_004578059.1 lncRNA downstream 183444 31778121 ~ 31846428 (+) False LOC113540254
XR_004578058.1 lncRNA downstream 183448 31778125 ~ 31846428 (+) False LOC113540254
XM_026937095.2 mRNA upstream 506 31584100 ~ 31586755 (+) True zp3f.2
XM_034303928.1 mRNA upstream 5721 31566281 ~ 31581540 (+) True ap1g2
XM_026935828.2 mRNA upstream 26554 31548280 ~ 31560707 (+) True prmt5
XM_026936980.2 mRNA upstream 234131 31351201 ~ 31353130 (+) True c4h22orf39
XM_034303408.1 mRNA upstream 343182 31239568 ~ 31244079 (+) True si:ch211-119o8.6
XM_026936824.2 mRNA downstream 1837 31596514 ~ 31610197 (+) True dhx9
XM_026936825.2 mRNA downstream 7710 31602387 ~ 31610197 (+) False dhx9
XM_026936654.2 mRNA downstream 25168 31619845 ~ 31684467 (+) True lamc1
XM_034303858.1 mRNA downstream 95498 31690175 ~ 31706269 (+) True lamc2
XM_034303620.1 mRNA downstream 137935 31732612 ~ 31753667 (+) True smg7
TU87898 other upstream 234117 31351261 ~ 31353144 (+) False c4h22orf39
TU87706 other upstream 489373 31061730 ~ 31097888 (+) False spsb4a
TU87615 other upstream 820129 30746131 ~ 30767132 (+) True G73944
TU87616 other upstream 820129 30746131 ~ 30767132 (+) False G73944
TU86682 other upstream 1964224 29619993 ~ 29623037 (+) False asip2b
XR_004578111.1 other downstream 175145 31769822 ~ 31776798 (+) True LOC113540067
LOC117597174 other downstream 351371 31946048 ~ 31946542 (+) True LOC117597174
LOC117597173 other downstream 364345 31959022 ~ 31959667 (+) True LOC117597173
TU88365 other downstream 364365 31959042 ~ 32330845 (+) False LOC117597173
LOC117597122 other downstream 366192 31960869 ~ 31965136 (+) True LOC117597122

Expression Profile