RNA id: XM_026937212.2


Basic Information

Item Value
RNA id XM_026937212.2
length 2149
RNA type mRNA
GC content 0.39
exon number 6
gene id si:ch73-344o19.1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28739126 ~ 28745646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacaccccttcattCCAACACACACGTGGGTGTGTGGTCTGACATCTGAGTGTGCTCAGTGGTATTACTGATCGCACATCACCTGGCTcgcgcttgtgtgtgtatgtctgtatatgtgtgtgtgtgtgtctgttataAGGGAGGTGATAaagccacatacacacacatgaggaTATTTATAGGGATGATATTCAAAGAAGTGTAACAACGCAGAGAAGATCAGAAATTCAGCAAAATATATCCATCTGTTTGGTGTGAATTATGgatgcacttgtgtgtgtggtgtggagtGTAgcactcctgacacacacaccgagtCTCAAAGCTGAATCCTCCGCATCCGTTCCAGCCTCGACCACCGTGTCTCTAAATGAAGCCATTGACCTCTTTGTGACCTCAAAGATCACTGACCCCAAAGAACCCATTAGGACGGACATCTCTCGTCCCCCACCTCCACCACAACATATCAGCAGCACTAGCACAGAACGAGACAGAGCACAAGGTGCATCCACCGCCTCCCTTCTTACCTTGACTTCAATTTTGACCACAAATCATGCAAACACAAAGATCACCGACACTGAAGAGCCCAACACAGAGACTACCATCGGGACAGGCATCATTCAGCCAGCAGAAAGCATCATGTCAACAAATGCAACAGAAGGTTCTTTAGATATCACTCCATCCCTCATTCTACTGAGGAGCACCACCATTACACCAGGATCATCCATCCCTTCATCTACCAATCTCAGTGAAGAACAAAACTCTTCTCAATCCACCACCTCTGAGACGATTCCAACAGTATCTTTAATTCCACCTTCTATTCCAGCTTCTACTCTGAAAGACTTGATTACTGGATCTGCTTCATTAGGGAAAGAGAACCAGGATTGGCCATCAGAACTAGATGTGGGAGATGAAGACTCAGACAAATTGCCTTCTCCTTCTCCATTGGATCCTTTGCTTGCTGGCCTGATCTCCATCTTCATCATTAGCACTGCTCTGCTCTCCATCATACTCTTCCTCAAATTTTGCCAACAAAGCGGCCATCCTGAATTCCACAGACTGCAAGACCTTCCCATGGACGATCTCTTGGAGGATACACCGTTGTCAAGATATTCATATTAAAGAGGCTCCTTCTCTATTGATGGATACTGTGGGGAACAACAGATGGGTTACAGTCCGCAAATGTAGACGTACAATTCTATACTACCATAATCAAAACACTAGCTGAggaaatatcttttggaagaatggtgctCCGTCCTTTCAATAGCCAATAAATATAGTtgcagagacttgtagaatccaTGCCAAGCTGCTTGTGGTGGTTTGACACTTTACTAAAATATGTGTTAAATCATGTAAATTATGAtcatttagtttgtttgttttgtttgttctcttTAGATGTGAACAATAGATTAATCTAAGTCAGTCATTTCAACATCTCAGTAGCAAACAGTTTTATGTGCAAAGGTGGGGTGGTGTGTAACTAGTactttgtaaataatattaaattaacttTAGATGTAGCAGTGAATTGTGTTTTTTGAACAGTTTGAACAGTTTGTAATGTAACATATTGAAGTTTTTTCTGCTCTTTGTACGTATTACACTTTGTgccatatatatttattattgtactaTTTTGTGCGGGTGAATGTTCTAAAGAGTCACAGTAACACTTTACGGTTgcgtgcaaaagtttgcacccccatAGTTTTTTGAAACTGGAAAATGTACTtcaattttacatttcattacaaaaaaaagttgtcttggggttaatgtttttaacctattaatatattaacaattatGTACTCATTTTTGTTACctgtaaataaaagtaaatgaagGAACATCTAAAAGCCTAACGTTAAATATATTGTTGgtagaaatgtgtgttttttttcatcacatgcTTTGTTGAGGTAAATGGCCAATGACGCAGTAGTTCAAATGAATGTCATGTAAAATAGAAAAGGTTATAAATGTTGATTTAAACTTTCAGAAATACCGTGATGCGTTGAAGTAGGATGTTACGAATGTCATGAATACACCCATCATATAAAGCGACTTAATGCAGTTTTGCTGGTGTTTGAATTTTACTGGTGTCATTtagtaaacattttattcatatgaTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85849 lncRNA upstream 80591 28658276 ~ 28658536 (+) True G72428
TU85843 lncRNA upstream 87506 28651414 ~ 28651621 (+) True G72422
TU85820 lncRNA upstream 101926 28619824 ~ 28637201 (+) True G72404
TU85824 lncRNA upstream 111154 28623240 ~ 28627973 (+) True G72408
TU85789 lncRNA upstream 160177 28574922 ~ 28578950 (+) True G72378
TU85891 lncRNA downstream 12909 28758555 ~ 28761451 (+) False gng5
TU85895 lncRNA downstream 41971 28787617 ~ 28791836 (+) True G72472
TU86346 lncRNA downstream 47201 28792847 ~ 28797137 (+) False selenot1a
TU86397 lncRNA downstream 116770 28862416 ~ 28901261 (+) True G72869
TU86402 lncRNA downstream 127957 28873603 ~ 28873988 (+) True G72872
XM_026936340.2 mRNA upstream 16270 28716264 ~ 28722857 (+) True fzr1b
XM_026936875.2 mRNA upstream 39711 28691096 ~ 28699416 (+) True aldh9a1b
XM_026936935.2 mRNA upstream 72496 28654756 ~ 28666631 (+) True slc1a7a
XM_034303287.1 mRNA upstream 127970 28605823 ~ 28611157 (+) True LOC113540233
XM_026935934.2 mRNA downstream 12899 28758545 ~ 28761448 (+) True gng5
XM_026936491.2 mRNA downstream 34103 28779749 ~ 28784107 (+) True otol1a
XM_034303989.1 mRNA downstream 34103 28779749 ~ 28784107 (+) False otol1a
XM_026936511.2 mRNA downstream 47207 28792853 ~ 28797159 (+) True selenot1a
XM_034304057.1 mRNA downstream 68437 28814083 ~ 28823502 (+) True zgc:153615
trnat-ugu_8 other upstream 1117744 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1118450 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1181225 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1182479 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 1249802 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 128710 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 874347 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2000485 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2000485 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2316084 31061730 ~ 31097888 (+) False spsb4a

Expression Profile