RNA id: XM_034303512.1


Basic Information

Item Value
RNA id XM_034303512.1
length 2609
RNA type mRNA
GC content 0.41
exon number 5
gene id kcnmb2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29461041 ~ 29466020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agttatggatttacctctaactgttacaaagcactgacactggagactccttccatgaatgttaagtAAACGTCTCTGTACAGAAAAAGTCACCATACCAATGATTATTCTTATTATGCTACCATGTGGAGTGGGCGCTATATAGAACATGCGAGACCATATGGAACATGGATAACACTTTGCTGATGTTTAATGAAATGCGATTGGTTGTACTCCGAGGTAATCCATCACTCCGTGGACGTCCTGCGCAGGTGCTCTATGAGTGGACGCTGACAGAGCGCTGGTTTCACCACGTGCATCTATCGTTGCCGTTCTTATTATGTTCTGCACAAGAACATACCGGCGGTGATCCATCACTCTGTCCCATCGGATAAAGAATTCTTTGTGTTAGATGTTTGCACAGAGTTGGTGCCATAGAGCTTTCCTAGATGGCTTAGATCACGCTTCTGCACACGGACGCATTTCTTATACGTTACGTAGCGTGTTTTAACTTTTATTCCTCAGGCCAGCTTTTCCCGAACGTCCCACGTCGATCGCAAAACAATGCACCAGAGGGCTTTCCAGAGTTCTCTTCAGAGACCGTCTTCAGGCAGATCTCAGCACAAACCATCAGGAAAGACGCTTTTGGTTACGGAGAGAAAAGTCTCTAATGAGAAGAGtcagtgtgtgtgttataggagCATCTATCAGATGTTGCGAGGCCCTGAGCTGCTGGAGAGGAAGAGGACGGAGACGGCGCTGAAGGCCGGAGAAGACCGCGCTATTCTGCTTGGCCTCGGCATGATCTTCTGCTCCACCATGATGTACTTTGTGACCTGCATCACTGGGGTGCGCTCATACAGcgacagCAAGTGGACGGAGAAGAGCATGTGTACCATCCTGAACATCTCAGTAACTGAGGAGATGAACTGCTCCTACAGCTGTGGTGTGGACTGCTCGAGGAGCTCCACGTTCCCCTGCGTGCAGGTCTACGTTAGCCTGAACTCCACCAATCGCGTCGGGCTTCTCCATCACAACGAAGAATCAGAGAACACCGGATCTAAGTGCTTCTACATCCCGAAATGTCAGAAGGCCCATGCTGCTATTCACGCTGTGATAATGAACGTCTCCGAGAAGTTGCGGGAACAGCGCCACATCCCGTGCTACTACGATCCCTCTGATCACCAGGCCAACTTCCTCCTGAGCCGATTATACGGGAGCAGCGccattttcctctcttttttctggcCTTCTTGCATGCTAGCAGGAGGAGCCACCATCATCCTGTTGGTCAAACTTACCCAGTACCTGTCCATCCTGTGCGAACACATCAGCAAGCGCTCCAAGTGACTCCGTTTCAGTTTTAATATTCTGATAAATCAAAATGGTTGATCGAGTAGCACTGCGGTATAATAGGGTTTacgtttatatttgtttaactAAAATAACGAAAAAAAGCAGAGCAAACATTATAATCGCATAACAGAATTACTAAAACAAgaatcagtcattcagtcattaTAAAATATGGTGGAAAACAAAGTCTATTTTATTGTACAGCATTTCAACAAGCTATAAaactaaagatttttttttatatataagaatatagtttttaagacatttttattagtgGTTTAAGAAATTCGCatataaaactaaaatctaTCTGACCATGAAGATAAATAAGCTGAAGCAATTTAGTGATActgatgagaaatccaacatggCACAATATTTTCCAACataattcatttgaaaataagAGATTTTTTGTCTCTAGCAAATTTCACAAAAGATAAATAGCATTATTGTAAGCTATAATGTCTATATTGGCCATAAGTTGTCAATCTTTTAGTTAAACCGTGTTAATGTTTTCTTAGACCACACCAAATTAAAAATTTCTGCTGAATTATTCCAACTCATGTgtatatgttgataaatgccaatgaGACGTTGATTACCAAGCACATTCATGGGTTTAAATGTAGCCAAACCCAACAAAACGGCATAGCTGAAAacgacaaaatgatgactaCATGGTGAAAGACCACCTCTTCAGTGTGACATTCATTACATCTTCCACTAATGCAGCTTAGCCACTGCAGTGTGTCAGCTACAATAGACACATACAAattcttccttctttttatagggtgccattacttttgtcctaactGACTAGCCAgtcttattttgtcttaaatttCTCCTACCACAatggatcgctttctttcaagtcaatAATACAATCTAAAGCCGATCAGTCAAGGTTCACGTTAGTGAGTCTGCTTATACgtacatttacacaaactcaggaaaTCTCGTTgtctatgaacatttttctgaaataacTGGATTTTGTGGAAGTGCTCCTATGAACGACTTACGAAAAATTGATCATgttcagtttgataaatgaagcccagtgttattacagtttaaattaggctaatTTGCTCCACAATGATATCAAGATAATTAAAAAGAAGATGGTCATTCTCCCACACCTCAGTTATTTCATAACTCCACTGAGACACCACTAAAGGACCCAAAGTTATTCTTCTAGCAGTCTCGGAacttgaactcataacctttaACCAATACCTCATTGCCCAATGAGTCACATT

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86901 lncRNA downstream 140707 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 242883 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 245990 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 271701 29188158 ~ 29189340 (-) True G73249
TU87006 lncRNA upstream 74075 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 141581 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 205167 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 245066 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 246873 29712893 ~ 29713446 (-) True G73458
XM_026937224.2 mRNA downstream 8248 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303445.1 mRNA downstream 89515 29359500 ~ 29371526 (-) True pcolce2a
XM_026936950.2 mRNA downstream 89519 29359500 ~ 29371522 (-) False pcolce2a
XM_026936180.2 mRNA downstream 124338 29333119 ~ 29336703 (-) True chst2a
XM_034304142.1 mRNA downstream 138124 29300306 ~ 29322917 (-) False dipk2aa
XM_034303979.1 mRNA upstream 53071 29519091 ~ 29530681 (-) True eif4a2
XM_026937263.2 mRNA upstream 98201 29564221 ~ 29575414 (-) True LOC113540665
XM_026937014.2 mRNA upstream 110678 29576698 ~ 29592827 (-) True ripk2
XM_026935978.2 mRNA upstream 163950 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 163950 29629970 ~ 29666855 (-) True LOC113539879
TU86878 other downstream 308660 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 576076 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 576076 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 578877 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 808616 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 57374 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 57703 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 58489 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 58969 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 98582 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile