RNA id: XM_034303869.1


Basic Information

Item Value
RNA id XM_034303869.1
length 1400
RNA type mRNA
GC content 0.55
exon number 2
gene id bcl2b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27972641 ~ 28008193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAGGAGAGACAGTAACTGTATTGGGtatactttttgtttgtttgtttgtttgtttgtttgttatagaTATCTGTTGATTCTGTAATAGAGGTAATTGCCTCGCTGTTGCACGCGGGTGTAAGGGGCAGgatctgcaacacacacacacacacacacacacacacagagtcagtgtGTTCTCTGCACGCGCTGTTTCTAACTGAACCGAACCCGCACTGCTCGGAAACCTGATGCGTCCCGCACGCGCACGCGCGCGCGCCCGGTTTACAGTCGTTCCGGAATGACACACTCACGCGGACACACTTCCTGAGCCGCTTTCAAGGATTCCTCTTCCCCCCTCTGGCTGGAGGAAAGTGGGCGTTTGCTTTTTCCTAAAGCACGGAGAACTCGCAGTACAGCTCCTCCAGCGCGagactgcactgcactgcacgCGCTGCGCGTTTCCCCTCCTCAAGATATGCACGTGAATACACACACGCCTGTCTTAAGCCTCGTGAGAAGGCTGTATAATCCGTTAATTCTGAATGTAACGAATTGTAAGAGCAGCCTACACTGAGACGCTTCTGGGACCGGACATGGCGAACGGAAATCTTTACGATAACCGGCGCATCGTGGAAAAGTATCTGAACCACAAACTGTCGAAAAACGGCCACGCGTGGGAGTTCCATGGGTGTCGCGCGAGCAGTTTGGACGACCAGGAGGAGCGCGAGAAGGAGAGCGCGCGCCGCGCCACTCTGCACAGAGCTTTGCGCGAGGCCGGTGACGAACTAGAAAGCCTGTACCGACCGGACTTGGCGGAGATGACGAAGCGCCTGCGCGCGACTCCGGTGGGCGCGGAGCAGCGGTGCTTCGCGGCCGTGGCGGACGAGCTGTTCCGGGACGGAGTCAACTGGGGTCGCGTGGTGGCCTTTTTCGAGTTTGGCGCGATGGTGTGCGTGCAGTGCGCGCCGGAGGCCGAGAGGAGCGCGTGCGCCGAGAACGTCGCGCGCTGGATGGCCGAGTACCTGAACGGCCCGCTGAACGGCTGGATCCAGGAGAACGGAGGATGGGTACgtcactgtgtcactgaTGCCTTTGTGGAGCTGTACATGAGGAAAAAGGACTCGGTGTTCAGCAGCTCTTGGCCGTCCTTAACGACTTCCGTCTTCAGTTTGGCGGCACTGGGGGCAGTCGGCCTCACCATTGGGGCTTATCTCACTCAGAAATGAAGAACTCCAACCGTCCtctcctcctttcctccctcgTTCCCTCAGCACCTTGGAGGTGCTCACATCCTGCATGTTTCTTCAAAGCCTCTCATATTCTTGTCATTATTCACAAGTCCTTCTTCACTCGCCCTCAAAAGAATATGACTCAGATGTGAAAGCTAAGTAAGGATTtgttccaataaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85492 lncRNA upstream 413214 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 413531 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA upstream 413539 27556204 ~ 27559102 (+) False LOC113540592
TU85493 lncRNA upstream 413628 27556204 ~ 27559013 (+) False LOC113540592
TU85494 lncRNA upstream 416935 27553127 ~ 27555706 (+) True G72118
TU85626 lncRNA downstream 3551 28011744 ~ 28012459 (+) True G72236
TU85674 lncRNA downstream 106258 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 294658 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 308211 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 460755 28468948 ~ 28471765 (+) True G72336
XM_034303291.1 mRNA upstream 6353 27957885 ~ 27966288 (+) True kdsr
XM_026936599.2 mRNA upstream 15730 27941464 ~ 27956911 (+) True vps4b
XM_026936600.2 mRNA upstream 15730 27947400 ~ 27956911 (+) False vps4b
XM_034304026.1 mRNA upstream 33217 27857336 ~ 27939424 (+) False kmt2cb
XM_026937080.2 mRNA downstream 39006 28047199 ~ 28054319 (+) True nmur1b
XM_034303328.1 mRNA downstream 56874 28065067 ~ 28069266 (+) False LOC113539840
XM_026935908.2 mRNA downstream 56875 28065068 ~ 28069266 (+) True LOC113539840
XM_034303329.1 mRNA downstream 56875 28065068 ~ 28069266 (+) False LOC113539840
XM_026935909.2 mRNA downstream 56875 28065068 ~ 28069266 (+) False LOC113539840
trnat-ugu_8 other upstream 351258 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 351964 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 414739 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 415993 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 483316 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 866163 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1611800 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2737938 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2737938 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 3053537 31061730 ~ 31097888 (+) False spsb4a

Expression Profile