RNA id: XM_026937243.2


Basic Information

Item Value
RNA id XM_026937243.2
length 2193
RNA type mRNA
GC content 0.48
exon number 12
gene id nadkb
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26881468 ~ 26889336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGCGAGTAAAATAAAACGAATGCTGTGTGCTGAATCATTCTGCAAAATACTGACTTTTTACAGTGTCCTCTGTGGTTAACATACATTATGAGGGCGAACTGTTAGAACAGGAAAAACGTTCTAGCTAATCTTCTACAGATAATCTACTTTAGAACCAAGGAGGGCGTTCACTTCCGTCGCTGGTCTATGACGTATTCTGCGGCGGCTTCAAGCTCAAATGGATTAGCAGCAAACTAATAACTCTTAAAAATTGTATAAAGATTAGCGACATTACTAGTTCTAGCTCACCCTTTGTTTTAACGATGTTAGATATCGTTTAgattaaatagttaaaataaatcCTCTACAGTGACAGTTTCATCTCTCCAGCCTGAACACTCTGTGTTTGGATTTAAAGATTTGTCTGACAGCTGACAGTTACAGtgtgtgtgttcaggatggAGTGTTCAGATGAGAACCAGCCTGATGAGGTGCCAGAAGAACAGAGCCGTGGTGCTGAAGATCACAGGAAATCTCCaaagagacggagagagatgaagagaagtCGGCGGAGAGTGAACGGAGTGGAGCAGGTGTGTTCAGGGAGCGAGCGGAGAGGACATGCAGAGTCACATGATACCTCTGAGACAAGTGAGAGCTCCACAAAGAGACTGGACAAGTGCAGACGAGCTCACTTCCTCCATGGCCCGTATCCCAGCACACACTTCGGACCCAAAGCCTGCATCCTGCCCAACCCGACCTCCATCATgcACATCCAGGACCCGGTGAGTCAGAAGTTGGTGTGGAACAAACCGCCAGTCAACGTGTTGGTGATCCGCAAGATCCGAGATGAGAACCTGCTGGAGCCGTTTAAGGAGCTGTGCAGCTTTCTTATCCAGGAGAAAGgtctgagtgtgtatgtggagaAAAAGGTGGTGGAGGATGGAGCTCTGATGGCAGATGAGTCGTTCTCCAGCATCAGGAGACAGCTGTGCACCTTCAGAGAGGggtTTGATGATATCTCAGACTGTATAGATCTGATAGTGTGTCTGGGAGGAGACGGTACACTGCTGTACGCATCTTCACTCTTCCAGGGCAGCGTACCCCCCGTCATGGCCTTCCACCTCGGCTCGCTCGGCTTCCTCACACCCTTTAGGTTCGAGTCATATAAGACTGAAGTGGACAAAGTGTTTGCAGGCAACGCTGCTGTCGTGTTGCGCAGTCGTCTGAAGGTGAAGGTGCTCAAAGGATCACTTCAGAGGGACCAGGAGAACGGCAGtgttacacacactcacaccaaccctgtcacactgcagctacaggtgctgaATGAGGTTGTGGTGGACAGAGGTCCCTCCTCTTACCTATCCAATGTTGATCTGTACCTGGATGGACGTCTCATCACCTCTGTCCAGGGAGACGgtgtgatTGTGTCAACACCCACAGGAAGCACAGCGtacgcagcagcagcaggagcatcCATGATCCACCCCAATGTCCCCGCCATCATGGTCACACCTATCTGCCCTCACTCCCTCTCCTTCAGACCCATTGTAGTGCCGGCTGGGGTTGAGCTTATGATCGCTCTCTCTCCGGAAGCTCGGAACACGGCATGGGTTTCCTTCGATGGCAGGAAGAGACAGGAAATCCAACATGGAGACAGcattaAGATCACTACGTCGTGTTACCCGGTTCCGTCTCTGTGCTGTCACGGGCTGGTGTACGACTGGTTTGAGAGTTTAGCAGAGTGTTTACACTGGAACATCCGCaagaaacaaacacagctgAGCGACGCCTCTGACTCCACCGACACCGACAcctgactgactgacacacacacacacacacacacacacacacacacagagctgcataACGGACTgtagtttgtgtaaatttgctGCTGAATCAtcataaagtgctcagtgatgACGtcattgtgtatttattttaattatgtgcTTCATTAACGAGTGTGCTGAAGTGACATtccagtgtgtgttaaagcgcAGTGTGGCTCAGTGTGACACGGCGCCTCCCTGTGGACAAACTGCTGCActgttaagtaaaaaaaataatgataaccacataaaataaacatgcagaATCCTGAAAACAATTAGAGCTGCACTCTTACTCTCACTCacaatgttcatatttataaatgtaaaataagagCAATAAAGTGACAGAGCCGAGCGGCGCTGAGTGA

Function

GO:

id name namespace
GO:0006741 NADP biosynthetic process biological_process
GO:0019674 NAD metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85024 lncRNA downstream 22013 26847346 ~ 26859455 (-) True G71734
TU85022 lncRNA downstream 24796 26853267 ~ 26856672 (-) True G71732
TU84994 lncRNA downstream 184371 26696893 ~ 26697097 (-) True G71707
TU84992 lncRNA downstream 185147 26694946 ~ 26696321 (-) True G71705
TU84990 lncRNA downstream 191074 26689070 ~ 26690394 (-) True G71704
TU85065 lncRNA upstream 5347 26894681 ~ 26895564 (-) True G71764
TU85066 lncRNA upstream 45656 26934990 ~ 26935197 (-) True G71765
TU85140 lncRNA upstream 141983 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA upstream 141983 27031317 ~ 27035852 (-) False G71815
TU85185 lncRNA upstream 253772 27143106 ~ 27151314 (-) False G71854
XM_034303326.1 mRNA downstream 36450 26835646 ~ 26845018 (-) False samd7
XM_034303325.1 mRNA downstream 37495 26835646 ~ 26843973 (-) False samd7
XM_034303324.1 mRNA downstream 38186 26835646 ~ 26843282 (-) False samd7
XM_026936549.2 mRNA downstream 38299 26835646 ~ 26843169 (-) True samd7
XM_034303851.1 mRNA downstream 45580 26835025 ~ 26835888 (-) True LOC117597119
XM_026936963.2 mRNA upstream 14574 26903908 ~ 26913580 (-) False skila
XM_026936961.2 mRNA upstream 14574 26903908 ~ 26913580 (-) True skila
XM_026936874.2 mRNA upstream 27825 26917159 ~ 26933519 (-) True prkci
XM_026937110.2 mRNA upstream 91855 26981189 ~ 26982209 (-) True LOC113540546
XM_034303296.1 mRNA upstream 216160 27105494 ~ 27108411 (-) False tmem125b
TU84853 other downstream 330438 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 330438 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 505380 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2576542 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2844614 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 207268 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 314449 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 506023 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 506817 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 539086 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile