RNA id: XM_026937256.2


Basic Information

Item Value
RNA id XM_026937256.2
length 3348
RNA type mRNA
GC content 0.43
exon number 1
gene id cd248a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20735827 ~ 20739174 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAAGTCCTCAGTCTAGGCGCAAAACCCCATTAGACTGGAGAGCGTGCGGAGGGCTAAGAGAGAAAGTAGACAGAAAAGTTGGGTCAAGCAGGGCTCAGTAAATGTAGAATAGCtagtaaaattaaaacaagtgaaaaagaaaaaataacagaGAGCAGGAgactgaaggagagagagaggttgtgaaagaatgggcttTCCAGTGTATTATCTGATACTTCTCTCTCTACTGCTGTTTCTCTCTAGCGTGCAGACTCAGGAGCTGCAAGATCAAGATGCCCTATGCAATGAAAACAGCTGTTTAGTAATCTATTTTCAGCGCAAAATCTTCCTGGATGCCTGGCGCAGCTGCAGGAAACAGGGTGGTAACCTTGTCACCATCAAGAGTCCAGAAGAGGCAGACCTAATAGAGACTCTCTTCTCTAACCTGGAACTGGAAAGTAgccgtgtgtttgtgtggattgGCTTGCAAAGGCAGCCCCGTAAGTGTGCTGCCGGCCGTCCCATGCGAGGATTCTCCTGGATTACTGGGGAGCAAGATGCCCAGTACACCAACTGGCAGCAAGAGGACTCTATAAACACCTGTTCAGTTCCACGTTGTGTGAGCATAGGTTACAGTACCTCCCCTCAAAAAAGCCAGGATAACTTCAAGTGGAAAGATGGACCTTGCTCAATCCCTGTGGATGGCTACTTGTGCAGGTACACTTTCTCTGGCATGTGTCAAGCTATTTCAAATGAAGGGCATGGAAATGCATTGTACACAACCCCATTTCACCTTGTCACCTCACTCTTGACTCATATTCCATTTGGGTCAGTTGCAACTGTACCCTGCCTAACTACAGGTGACCAAACAGTACTGTGTACTCAAAGAGAGGATGGGACTGTGGGTTGGAACAGAGATCCTCCTTTCTGCTCTGATATTTTCAAGACAAGCTGGTGTGATAAGGATAATGGTGGTTGCCACCATTACTGCATAGTAGATGACAATCACTACTACTGTGATTGTAAGGAAGGCTTTCTCTTGGCTGAAGATGGAGTGAGCTGCTTTCAAACTGACCCCTGTCGAGGATCTCCCTGTGAATATGAGTGTCTGACAGTGATGGACAGTTATCGCTGTGCCTGCCCCGAGGGCTACATGCTGGCACCAGATGAGCAAGGCTGTCTGGATGTCGATGAGTGCTTGCAGAGTCCATGTGAACAAATCTGTGTAAATGCACCAGGCAGCTTTGAGTGTCACTGTCGTGATGGCTATAAACTTGATGAGGAGGGAACTTGTGAGGACATAGATGAGTGTGCGGAGTCTCCATGTGAACATGATTGTGAGAATATAATAGGTTCTTATGTATGTCATTGTCACTATGGCTTTGCTTCCCATCCAGGGAATCCAAATCAATGCTATGATGTCGATGAATGTCAAATTGAGGGAACCTGTGAGCAAATGTGTTTAAATTCCTTTGGGGGATTTGAATGCTTCTGTGAAGAGGGTTATGATCTCCAGACTGACCTCTATTCATGCAGACCCAGTGATGAGCAGCAATCTTCCACAGTACCTGCATCCATCCTCTTGATCACAGATCTTGCTAAACATATGGAAGAATATCAAGACCCCGATTACTATAAGCCACATGAAAATGAATCTCTGGAATGGCTTACTGAGCTTCCTAATGTGGAGATGGTTCCCACTGACCTGATGTGGCTCACTAGTGCTACCCAGGAGGTAACTGAAACCACTTCACCAACTGAAAGCCCTACTATCATCGTTAACATGGAATTGGATAACTTAGACCAACAAACAGTTGCTGTGGATGCCTTTTTATCTTCCACCACTTCAACTCCACTGTCAGAATATTATGAGGATGAGAGTACCACAGAATTCACAGTGCCCCCCACCACTACTGTAGCAGGCGGTGCTTGGAAATGGATGTGGTTCAGTCCTAGCCCAAATGAGCTTGACAAAGAGGGAACTGCACAAAGTTCTTTCACTACTGACACAGAATATGAAACTCATGGGACCGATCTTGATAATGGCAGCCATGATTATGAATCTACAACCTCTTACACTGAATTACAAACCCTTACACAGGCCCTCCTATCTGCTCAGGGAGCTAAGAATGGCAGCAGCAATGAGCAGACTCAGGGCAGCAGCTGGTTGCTGGTTGGATTGTTGGTACCGCTATGCATCTTCATTGTGCTGATGGTGGCACTGGGTATCATCTACTGTACTCGGTGTACCTCTAAGCCACAGAACAAGAATGCCACTGAGTGTTACCACTGGATTGCTGGTGCTGGTGATAAAGCAGCTGCTGATATGGCAAGTGGTGGTGTAACAAAAGTGTAACCAAACTGTGCCAGGACAAGCAGATGAACATATACATGTACagatttttgaaatatttacagcagATGGTAGGACAAGGAAATTAGATGAAGAACTGTCTTGTATCAATTCAATCCTCAATTATAATGGTGGATATTTAAATGGAATATCTGTCAGTGATAAGACAGGGGAAATGGGAGGAACTGGGAAGCCTCTAACACTGTTTCTCTGCTGTACTCtgctgaaagagaaaagaacctgttgttttatttcttagcCTCCTCACCCTACCTGTGACATGGTTGCTTAACTGTTGCAATGTAGCAGCCACAAGGTCATAGCTAATGTGAAAAGACACCTTAGCCTtgtttcacatatttattattattattttttttgttttgaagcaGCATTTTATCAGAATATTGTTTGTGCCTCACAGTAGCCTCAGAGAAGTATCATTTTTGTGAAAGTACTCCTGCGTTTGCCTTGATATTGAGCTGTACTACTTGTTTCCACTCTCTGAGCCAGATCTGATGGatgacattttttgttttgcaacCCAGAAATGGACAAAGATTGTGATTGTTATAGTGGACATCACCATGCTCCCCTCTGTGACCGAGACATATTTAACTGTCAGCTATTAGTGTGAGGTAGTGGTTTATTAACAACATGCCCAAAGCAAATTATGACAACAACCTTATTATTAAGTCACATGCTATAGGCTTGAGGGAAAGTAACTGAGAAGGAGTACTAATGAACATATACCTTTGACGgttaaagtcatttttttattttattttttttttaatttatgcataTTCTTAGTGGTGTCATTATGCTCACGCACGTACAAAACATCTGATCAGAATTACATGTATGATATTATCATGTGGCCAAGCAAAGAatgtcaaaaataattttaatctgtaaatattggACACTTTAGTTTATGAACACTCTTTGTTGGATTAATCCATTAACTCTTGCAAGTTCTGCTCATTAAAGTCTGATTCCACATCGTTAA

Function

GO: NA

KEGG:

id description
K06706 CD248, CD164L1; CD248 antigen, endosialin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80696 lncRNA upstream 42716 20692263 ~ 20693111 (+) True G68070
TU80695 lncRNA upstream 42774 20692263 ~ 20693053 (+) False G68070
TU80678 lncRNA upstream 100262 20635348 ~ 20635565 (+) True G68054
TU80554 lncRNA upstream 254072 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 460152 20250058 ~ 20275675 (+) True G67827
TU80850 lncRNA downstream 125704 20864878 ~ 20895955 (+) True G68192
TU80969 lncRNA downstream 449357 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 466571 21205745 ~ 21209324 (+) True G68304
TU80993 lncRNA downstream 494851 21234025 ~ 21234258 (+) True G68313
TU81190 lncRNA downstream 577081 21316255 ~ 21316515 (+) True G68435
XM_026937147.2 mRNA upstream 43605 20682708 ~ 20692222 (+) True rce1a
XM_026937148.2 mRNA upstream 48062 20682708 ~ 20687765 (+) False rce1a
XM_026936344.2 mRNA upstream 75272 20652575 ~ 20660555 (+) True rab1ba
XM_026935854.2 mRNA upstream 86641 20637228 ~ 20649186 (+) True si:ch73-40a2.1
XM_034304144.1 mRNA upstream 104841 20587613 ~ 20630986 (+) False ehbp1l1a
XM_026937340.2 mRNA downstream 104170 20843344 ~ 20846978 (+) True LOC113540687
XM_026936148.2 mRNA downstream 113570 20852744 ~ 20893531 (+) False pde5ab
XM_026936149.2 mRNA downstream 123264 20862438 ~ 20893531 (+) False pde5ab
XM_026936146.2 mRNA downstream 126092 20865266 ~ 20893531 (+) True pde5ab
XM_026936147.2 mRNA downstream 126092 20865266 ~ 20893531 (+) False pde5ab
trnaa-cgc other upstream 383342 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 581056 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 634729 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 906937 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 907445 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 281084 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 588172 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 889902 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 889902 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 1013242 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile