RNA id: XM_026937257.2


Basic Information

Item Value
RNA id XM_026937257.2
length 3525
RNA type mRNA
GC content 0.47
exon number 15
gene id tnn
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25904440 ~ 25932761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAATGCCTCACATTATCTCCCTCTGTGATCCCTGAGCTATAGAGAGAGGAACGCCCAGGGTGCCTATTGGCTCAAGGCTGCTCATTTAAACTGTGTGAGGGTTTTTTGGAGCTGGAGGACTACAACACTGCTCAGGAGGGCCAAGTCAGAGCTTCTCGACAGGTGCTCACTGCAAGGCACCTTGAGTAACAGTAAGAGATTCTTGAACTCAGGCAGACTGAGGAGGGACATTCAGAATCAGAGAAATAACTACAGCGGCCATGCTTCCCAGGCTAAATTGGCTTTGGTTGCTCCTGTTTGGGATGCTGGGTGTAGTCTCACTTGTTACACAGGCAGAAGAGTCTGAGAAAGCAGTCACATTTAGCCATGTGTACAGGATTGACTCTGGTTGTAAGCAGGACCAGCAGGCAGTTTTGCCTTCCCAGGACCAAGCATCAGAAGGTCAGGTCATGACGGTGGATGGGGAGAAAGACATTATTTTCAAGCACAACATTAAGTTTCCATCATCTAGCTGCAATTGCGCTGATTCAGAGGAATTCAAATCCCTGCTGTACCGTGTCAATGGTTTGGAGGAGGAGGTTACCTACCTGAAGTCCCAGTGTGCTCAGGGCTGCTGCAGAGGAAGCTCAGGTGGAGACACAAGCTGTAATGGCCATGGTGTATACCAGCACAACACTTGCAGCTGCAAATGTGATGCAGGCTGGGAGGGTCCAGACTGCTCCGTCTCCACCTGTCCGGATAATTGTAATGATAATGGCTACTGTGTAGATGGACGATGCATTTGCCACACTGGTTACATGGGCCACGACTGTGGCCTGCTCACATGTCCTGATGACTGCAATGACAAGGGCCACTGCGTGGAtggcaagtgtgtgtgctttgagGGCTTCTCTGGAGACACCTGCAGCATGCAGAAATGCCCAAGTGACTGCAAAGAGAATGGCCGCTGTATCGATGGACAGTGTCTCTGCGACGAGGGCTTTTTCGGAAATGACTGCTCTATGGTACTGGGTCTAAAAGACCTTCGTGTGATCAGGGTGACTGATGTGTCCCTGCTGGTGGAGTGGGAACATGTAAATAAAGCCGAGTACTACATGCTCTCCTACTATCCTTATGGAAATGAGGGAACCATTCAGGAGATCCGTGTTCCCAACACTGAAAATTCCTACTTGATCACAGGCCTCAAACCTGGAGTTACCTATATCGTGCAAGTACAGGCTGTCATCAAGGGTATCAGCAGTGAACCAGACCGCATCACAGCCACAACAGATTTGTCTGGTGTAGAAGGTGTTCGTGTGCTTGGACAGACAGAGGACTCTATCCAGGTGGACTGGCAGAATCCAGAAACAGAGGTGGATTACTTTAAACTACGTCATGCCAGTCCAGATGGCCAAGAGGAGCTGGAAAACGTAGCCAGGAGCCAGGAGGCTAGGACTGTGCACACCATTATAGGTCTTAACCCAGGCACTGAGTACCAAATAACAGTGCAGGCCATCAAAGGAAGCAATGAGGGCAAACCATCCCATGCCACAGGAGTCACAGACGTTGATTCCCCGAACAACCTGGTCACTAGGAACGTAACCGAGACCACAGTGTCTGTGATGTGGGAGAAGGTCCGTGCTGAGATTGATGGCTACATACTGACCTATAGCTCTGCTGAAGGCTCCAGCCAGGAGATCCATGTGGGAGCAGATGCCACTTCCTACCAGCTCACATCACTGAAACCTGGGGTGCTGTACACCATCTTTGTCTGGGCCTACAAGGGTTCCCGTTTGAGCAAGAAGAGCTCTACTGAGGCTGTGACGGAACTAGATGCACCTACTAATCTCTTGGTCCAAGAAGTGACGGAGGACTCAGCGATGGTGTCATGGGACAGAGTCCAAGCAGAAATAGATGGCTACATACTGAGCTACAGCTCTGCTGATGGCTCCAGTGATGAGGTGCGAGTGGAAGCAGACAGCACCTCCTACCAGTTCACTGGTCTGAGGCCAGGAGTTGTATATACAGTCTACGTCTGGGCCATCAAGGGCTCTCGCTCCAGCAGGAAAGCTACAACACAAACTGAGACAGAAATTGATGCTCCAAAGAATCTGAAAGCTATTGATGTTAAGACGGATTCTGCAGATCTAACCTGGAAACCTCCTCAGGCTCACATTGATGGCTACATTCTTAGTTACAGGCCTGATGACAGTAGTATGCAGactgtTGAGAAGAACTTTGTTGCAGGAGATACCAGATTTAGCGTCTCTGGTCTGGCCACAGGGAAGAAGTATATTGTCACTCTGATTGCCTATAGAGGCTCAAAGAGGAGTAAAGTGGTGGAGACCATATTTGTCACTGTAGGAGCAGCTTATCCCTTCCCTATGGACTGCATACAGATCATGAAGAATGGAAACATGGAGAGTGGAGTTTACAATATCTACGTGGCCAGTGACCGCAATAAGCCAATGCAGGTGTATTGCGACATGACCACAGATGGTGGTGGCTGGATTGTCTTTCAGAGACGCAACACCGGCAAGCTAGACTTCATGAAGCGATGGAGACAATATATCCAAGGCTTTGGGGACCTGACTGATGAATTCTGGCTTGGCCTGGAGAACATCCATGCACTGACCAACACAAGCACAAATTATGAAGTGCGCTTCGATCTGGGCCTCGGAAGCGAGCGTGCTTACGCTGTCTATGATGACTTCAAAGTAGGATCAGCTAAGCAGAAATTTAAGCTCACTATTGGCAATTACAGAGGAAACGCAGGTGATGCTATGTCCTACCACCAGGGCAGACCTTTCACTACTATAGATTCGGACAATGACATTGCCCTGGGTAACTGCGCTTTCACACACCATGGTGCCTGGTGGTACAAAAATTGCCACTTAGCCAACTTAAATGGCAAATTTGAGGACAACAGACACAGCATGGGGGTGAACTGGGAGCCATGGAAGGGCCACCGCTTGTCCCTGGACTATACAGAGATTAAGATCCGCCCAGTGAACACAGCTAGCCGAAAGAAGAGATCACTCAAGAGAAAAGCAGCTGCCTAATGATCAGTAAACTGCAAAGTGAAATGACACAAAGAAAGTAGAAATTGTGATTAATCAAAATATCATATattatctcattaaaaaaatatatgggtGACAACTGGCctttacagattacagatatTGATACAGACATAATTACAGATATTGTACAACTGTATTGCTTTATCTTAGAATAATGTCAAAAggtcaaatgaaaaaaaaaaaatcaatattttattatatttgtccGATGTAGCAACTTGTACAGTGTAAGATTATGGGATTATTCCCTAAACAGCTGTGGTATAGTTGGCCAATTTTCAAACTGTTAAGTGATTTCATATAGTCCCAATGATTCATTCATAATACAAGGGGCATATAAACTGTAAATTAGctatataattaaaattcacACATTATAAGTTCATTTTATCACCATTTCCTcattttacaattattacaGTGTTCAGTATGGAATGATGTCTTATAGATTTGAGGGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84476 lncRNA downstream 367 25903774 ~ 25904073 (-) True G71298
TU84465 lncRNA downstream 19183 25884659 ~ 25885257 (-) False LOC117597207
TU84466 lncRNA downstream 19183 25884659 ~ 25885257 (-) False LOC117597207
XR_004578114.1 lncRNA downstream 19197 25884128 ~ 25885243 (-) True LOC117597207
XR_004578064.1 lncRNA downstream 121546 25731393 ~ 25782894 (-) True LOC117597162
TU84477 lncRNA upstream 13450 25946211 ~ 25946576 (-) True G71299
TU84494 lncRNA upstream 69840 26002601 ~ 26002826 (-) True G71313
TU84536 lncRNA upstream 174705 26107466 ~ 26125084 (-) True G71354
TU84540 lncRNA upstream 194491 26127252 ~ 26127479 (-) True G71358
TU84543 lncRNA upstream 196887 26129648 ~ 26129854 (-) True G71361
XM_026937049.2 mRNA downstream 273240 25561334 ~ 25631200 (-) True pappa2
XM_026937050.2 mRNA downstream 273240 25580417 ~ 25631200 (-) False pappa2
XM_034303717.1 mRNA downstream 479264 25423546 ~ 25425176 (-) False LOC117597083
XM_034303716.1 mRNA downstream 479264 25423546 ~ 25425176 (-) True LOC117597083
XM_026937242.2 mRNA downstream 648591 25139815 ~ 25255849 (-) True brinp2
XM_034303577.1 mRNA upstream 37873 25970634 ~ 25973005 (-) True LOC117597050
XM_026935873.2 mRNA upstream 386526 26319287 ~ 26329275 (-) True parp2
XM_034303634.1 mRNA upstream 386526 26319287 ~ 26328755 (-) False parp2
XM_026935872.2 mRNA upstream 386526 26319287 ~ 26328732 (-) False parp2
XM_034303635.1 mRNA upstream 386526 26319287 ~ 26328181 (-) False parp2
TU83344 other downstream 1599514 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 1867586 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2372424 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2386770 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 2388081 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 440997 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 539319 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 604341 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 1163841 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 1271022 27203783 ~ 27204186 (-) True G71909

Expression Profile