RNA id: XM_034303203.1


Basic Information

Item Value
RNA id XM_034303203.1
length 2191
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC113540663
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19394155 ~ 19407627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGTGTTTTTCCTCTTGATTTCTTCTCCTTGTGTAATCTGAGAGTGCTGTACAGTCTGAGTGCACACATCCGGAGCGCTGAGGGTGAGAACAGCGCGCGCTTCGGACtgactaactgactgactgactgacacactttacactttacactttactaGCTGCATGGATATAAACCTGGACAAAATGAGAGGGTTATGGACGTTTCTTTTGCTCAACATCTTGGGAAGAGCTATCTGGGGTTTCCCGCAGCGGTGTAAACCTGGCAGCTATCTTCAAGGACAGTGCAGAAGTCTTCCTGAGGAAAAACCCAAATGTACAGAGATCATCTTGACCTACTGTAAAGATCTGCCCTACTCCACCACCATGTACCCTAACCTCCTGGAACAAAAAAGTCGCACTGAGGCTGAGCAGAGTGTGGAGTATCTGCTTCTGAATGTAGTTCATTCAGTGTTAAATGGGGAGTGCAATCCAGATATACGCATGCTGGGCTGCTCCATCATAGCGCCACGCTGTGAAAACAACAAGATCCTAAAGCCCTGTCGCAGCGCCTGCGAGTCTGTGCACAAAGCCTGTGACCACATGTTTGAGCGCATTGGAATGGCTTGGCCCTACTATCTAGACTGCGACCGCTTTTTTGTTAGTGAAGAAGAGGGCTGCTATGACCCACTGGAAGGCCTGAGAGAGAAAGAGGAGCCTGAACTGGATAGCATTCCAATAGAGGAGTCCACATCAATAGTGCCGTTCATGTATCACTCCAACACACAGATGTTCAACATCCTCAATAAGACAGCAGAAGAATGCTCTCATATTTCAAGAACATACAGCATTGGACAGAGTGTTGAAAAGAAAGACCTGCTGGTAATTGAGTTTTCAAGCAACCCTGGAGAACATGAACTATTGGAACCAGAGGTCAAGTACATTGGAAACATACATGGAAATGAGGTCATGGGCAGAGAGCTACTGATTTACTTGGCTCAGTACCTGTGCTCTGAGTATCTGGTGGGAAATACACGGATCCAGGCTCTCATCAACACCACACGCATCCACATTCTGCCCTCCATGAATCCTGATGGCTATGAATTAGCCCATTCTGAATTGTCCAGAGTTTCTGACGCAGATTATGATGAGGACGCCATATACACTGGGTATACAGCCGGTCGTCACAATGCCCAGAATATAGACCTCAATAGGAATTTCCCAGACTTGAATTCTTTTGTCTACAACCAGCGTAGACTCAAGTACTTTCGCAGTGACCATATTCCCATCCCAGACTCATACTGGCTTGGTAAGGTTGCTCCAGAGACGTATGCTGTTATGAAATGGATACGGTCCATTCCATTCGTTCTGTCTGCTAGCTTTCATGGAGGAGACCTGGTGGTGTCTTACCCTTATGACCTTTCAAAGCATCCTCTTGAAAAGAGCATGTTCTCTCCCACTCCAGACGAGCAGGTCTTCAGACAGTTGGCCAGGACTTATGCAAATGCCCATGCCACAATGTCCAGCGAGGACACAGACAGGTGTGGTGGCCACTTTGCTGATAAAGGGGGGATTGTAAATGGGGCTCAGTGGTACAGCATACAAGGAGGAATGGGAGACTTTAATTACCTCCACACAAACTGCTTTGAGATAACAGTAGAGCTGGGCTGTGACAAATTCCCAGCAGAGGACGATCTATATACAGGctggagagaaaataaagaggcTCTCCTGACTTTCTTGGAGTCGAAATTAGCCCTGTCCTCAGCTCAGAGCTGTCCATCTCTTCAACCTTTCTCAACCAAGCCACTAGTTTCAGTTTTGTACACTCTTTTCCCCCTCAAGCACCAGAATCCTGAATTTTGCAATCTCTCTGAATTCCTTCTGTACACGAGATTCAAGCAGGAAAACAAATGTGACATGATAAGCTTTTTGGAGCAAGTTATTTACTGGAGTGGAAAAAGTTCACAGAATCTCATCTTTAAAAGCTACTGAAGTGCAGGTAGTGGTGAATAAATTTGATAATCTCATGTGTTTTGTAATGAGCTACAGGAAAAGGTCTGTGGTTGTTCTTATCCCTGTTTATTAATGCAACATACCAGACTCTTGTGCAAATAAAGACAACAAAAGAATAATGACTCTTCAGATTGTTAGGGCATTTGTATAGCTGTATTACAAAACAAAGTTTTTCTAAGGTACTTTTgaagttgtatta

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79647 lncRNA upstream 18435 19373556 ~ 19375720 (+) True G67208
TU79640 lncRNA upstream 42251 19345844 ~ 19351904 (+) True G67205
TU79644 lncRNA upstream 42251 19345844 ~ 19351904 (+) False G67205
TU79518 lncRNA upstream 271531 19120859 ~ 19122624 (+) True LOC113540244
XR_003404012.2 lncRNA upstream 272135 19120838 ~ 19122020 (+) False LOC113540244
TU79674 lncRNA downstream 69285 19474495 ~ 19475474 (+) True G67227
TU79687 lncRNA downstream 93999 19499209 ~ 19501228 (+) True G67236
TU79722 lncRNA downstream 138836 19544046 ~ 19641619 (+) True G67262
TU79734 lncRNA downstream 213472 19618682 ~ 19621531 (+) True G67271
TU79757 lncRNA downstream 338430 19743640 ~ 19750374 (+) False G67291
XM_026937115.2 mRNA upstream 1037 19388605 ~ 19393118 (+) True gpr78b
XM_026936566.2 mRNA upstream 21400 19354380 ~ 19372755 (+) True trmt44
XM_026937227.2 mRNA upstream 55448 19328031 ~ 19338707 (+) True etnppl
XM_026937170.2 mRNA upstream 71280 19170699 ~ 19322875 (+) False LOC113540597
XM_034303433.1 mRNA downstream 49816 19455026 ~ 19470962 (+) True LOC113540575
XM_026936525.2 mRNA downstream 75845 19481055 ~ 19485146 (+) True LOC113540207
XM_026936526.2 mRNA downstream 75845 19481055 ~ 19485146 (+) False LOC113540207
XM_026936523.2 mRNA downstream 75845 19481055 ~ 19484110 (+) False LOC113540207
XM_034303403.1 mRNA downstream 246687 19651897 ~ 19694516 (+) True LOC113539894
TU79253 other upstream 535503 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1185591 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1263650 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 1383193 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1629621 17764461 ~ 17764534 (+) True trnat-agu
trnah-gug_4 other downstream 423101 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 423609 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 695815 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 742585 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 947204 20352414 ~ 20352485 (+) True trnaa-cgc

Expression Profile