RNA id: XM_026937262.2


Basic Information

Item Value
RNA id XM_026937262.2
length 2607
RNA type mRNA
GC content 0.50
exon number 10
gene id ntn4
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19971311 ~ 19983277 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGATCCAGCAGCGCGAGTCTGAGATGCGATGCGTGTGAAGGAGGGAGCTTCTATCGCGCTTCACTGCCCGCACTCTCTCCCGGCACATACACAGTAGGAGTGTGGCGGAGTGTCCTGGTAAACAGATGGCGGCGTCGCGCGCGATTTGCGCCGCTGCGCAGGTGAGCGCTTTCTGTTCAACACGGAGGCAAAGCAGCGCAGCTCCGAGGCGCTCGCGCACCTGGCCGAGCCACGCTAACGCAGTCATGCTTCTGCTTGCCGCTTGAGAAACGCTGGCGCTACTTGCGGATCCTGCGCCTTGTTTTGGGACAAGAGAATATCCACTCCAGCGCTATTCGAGTCTTCTTAAGAGATTGGAGacggttttgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacattttgACTGGGCATCGATGGAGAGGTGGGCGTTGTTTCTCGTGCTCGCGTGCGGCGCTTCTCACTCTGCGCGTTCAGGCTGTGAGAACCGTGTATGTAATCCTCGTATGGGCAACCTGGCCACTGGGCGCCCCATGCTCACGGACACGCAGTGCGGCTCCACTACACCAGAGTACTTATGTAGCTATGACGATGGCAGCTGTGTACAGAAGTGTAAAGTGTGTCACCCTCATGCTCACCCACCCACCTCCATGACCGACTCGTCCTTCATACAGCCGCCTACATGGTGGCAGTCAGCCGGAGACGCTATCACTGAAACGTTGCAGTTGGACCTGGAGGTGGAATTTTACTTTACCCATTTGATTATGATCTTCCACTCACCACGCCCTGCAGCCATGACTGTGGAGCGTTCGCGTGATTTCGGGCATACATGGAGTACCCTACACTTATATGCCCGCAACTGCAGCTCCTGGTTTGGACTAAAAGATGGCCATGGATGTACTGAGAAATACTCATCACCAAGGCCATGTAGTGGTGGagagGTTATATATCGTGCTCTCTCTCCCTGGGGCATAGTAGAACCCTACAGCTCAGAGGCTCGTGCCCAACTTGGCATCACCAACCTCCGAGTACGCCTGCTGCAGCCCCAGCCATGCCCATGTCAACTCAAAGAGAGTAATACCAGCCTCCGCAGTGTCCCCTATGCCATCTCGGACTTCATCCTGAAGGGAGCCTGCTTGTGCCATGGCCATTCTGATCAGTGTGTGCCAGCCACTGGCTCCCTGGCCACACACAATGGTGGACACCATGTGGTGCATGGCAAATGTGTGTGTCGGCATCACACAGCAGGTGATCACTGTGAGAAATGTGATCGTCTCTATAATGACCGACCATGGAGACCAGCAAGTGGCCTAACTGGAGAAGCTCACCAGTGTGCTAAGTGCAAGTGTAATGGACATGCAGAGAGTTGCCACTTTGACATAAGTGTGTGGCTGCGTTCTGGTCAGAGAAGTGGAGGTGTGTGTCACTGCTTGCACAATACAACAGGTCGACACTGTGAGCAGTGCCAGATTGGCTTTTACAGACATCCAGAGAGACTACTGACCGCTGCCAACTCCTGTACAGCTTGTTTGTGCAACCGTGTTGGAACTGAGAGTTGTAACTCTGCTAATGGGGACTGTATCTGCAAGCCTGGTGTGGCCAGCCCACTGTGTGACAAGTGTATGCTGGGATACTGGGGTTTCAGTGAGTATGGCTGCAGACCTTGCCACTGTGCAGGCGACTGTGATCCATACACTGGAGACTGCATGACGGGgtcagaTCCTGATCACAACACCACCTTATTTCGAGCAGAAGAACTTTTTTCTGCCCTGAACTTTCAAGAGAAATGTGTCTGCAAACAGCTGTCCCTTAGGAACAGAAAAGTCTTCTGCATTATGAAATATTCCTATGttcTAAAGGTAAGAGTGCTGGCAGCACATGATAAGGGCTCTCATGCCGAGGTGGATGTTAAAGTTCTGAAGGTGCTGTGGAGCAGCTCCACCCTCAGGCTCATGCAAAGAACTGTCACTCTGTATCCAGAGTCCTGGACCACTCGAGGCTGTACCTGCCCTGTACTGTACCCAGGGGAGGAATATCTTGTTGCTGGGCACCATGATGTGAGGAAAGATCGTCTTCTAGTCAACATGAAGAGTTTAGTGAAGCCATGGAGACCCAATCACAGTCGTCGAGTGCTACAGCTCCTTAAAACTAAATGCACCTGAGTTAGTTAGCAAGTACgcaagagaaaatgaaagagagaggaggggggtGTCGGATGTGGTCAAATTCAGCCAAAATTATTGTGAATTTACACAATGTCTTTTGCAACTGTGTGtcactgaatgtgtgtgagagatgaggTCAGTTATGAATGTCTGTTGTACAGAATGTATATTCATTGAATGTACATATTATAATGTATGAAATTTTTGTATCTTTTGGAGCCTGTACATACAATGCCATTTGTATATAATGTCTCAATGACAATATGCTCATAAAATGCAATAGAAAATGGTTTAGgactgacaaagaaaaaaacataactggCATTTTTTTGGATAACTGGCATTATTTCTTCTAGGACCCTGCTTTCAGGAAAATACCAACTTTGATGAAACTACTTGGAGAcaatgcttttaaataaattactacAGTTGGAAA

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process

KEGG:

id description
K06845 NTN4; netrin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80167 lncRNA upstream 5423 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 6225 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 54142 19916600 ~ 19917169 (+) True G67595
TU80110 lncRNA upstream 56908 19911739 ~ 19914403 (+) True G67594
TU80087 lncRNA upstream 82586 19888178 ~ 19888725 (+) True G67582
TU80206 lncRNA downstream 82753 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA downstream 82753 20066030 ~ 20067038 (+) False dock11
TU80393 lncRNA downstream 266781 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 497323 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 652071 20635348 ~ 20635565 (+) True G68054
XM_026937193.2 mRNA upstream 18088 19943740 ~ 19953223 (+) True si:ch73-71d17.2
XM_026936965.2 mRNA upstream 84610 19881928 ~ 19886701 (+) True slx1b
XM_026935817.2 mRNA upstream 99162 19867151 ~ 19872149 (+) True LOC113539773
XM_034303403.1 mRNA upstream 276795 19651897 ~ 19694516 (+) True LOC113539894
XM_026936526.2 mRNA upstream 486165 19481055 ~ 19485146 (+) False LOC113540207
XM_026937321.2 mRNA downstream 7407 19990684 ~ 20067220 (+) True dock11
XM_034303517.1 mRNA downstream 7407 19990684 ~ 20067220 (+) False dock11
XM_026937322.2 mRNA downstream 7407 19990684 ~ 20067220 (+) False dock11
XM_026937323.2 mRNA downstream 7407 19990684 ~ 20065692 (+) False dock11
XM_026936959.2 mRNA downstream 85784 20069061 ~ 20075035 (+) True LOC113540455
trnah-gug_5 other upstream 142421 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 142929 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1112659 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1762747 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1840806 18113444 ~ 18130505 (+) False frem1a
trnar-ucu_2 other downstream 117748 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 164518 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 369137 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 1036981 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1344069 21327346 ~ 21327420 (+) True LOC113540699

Expression Profile