RNA id: XM_026937263.2


Basic Information

Item Value
RNA id XM_026937263.2
length 2028
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC113540665
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29564221 ~ 29575727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTTGGGGAACTGCGTGTCCTCTGTGTAGAAAAACACTTTGCCGTCTGGGACTGCTACACAACACACGCTCTGGTGCTCAGCTGAGCCTCTGGATCTCTAAAGATAAAATCTGCATTATTCATCTGCACGGTTCTTCTCACCAACAGTTAACTCCTTCTACTGTCATTCATCATCGTTAGAGGATAAACTCTTGGACATGCGCCGAGTACTTTGCCCCTCATTTAGGGCAGACTCGGACCCAGACCTGAAAGCACCAGTGGGTCCTGATGGCCAGGCAGAGAAGATGGTGATGAGGAGGGAGATCTCTCTTGCCAGCGGGGTGTGCCTCATCGTGGGAAACATGATCGGCTCAGGGATCTTTGTCTCGCCCAAAGGCGTTCTCCTACACAGTGCATCTTATGGCCTGTCGCTGCTCATCTGGGCACTCGGGGGCTTGTTTTCTGTCTTCGGTGCCCTCTGCTATGCTGAGCTTGGCACCACCATTGGCAAGTCAGGTGCCAGCTACGCCTACATTCTGGAGGCCTTTGGTGGATTCCTGGCCTTCATCCGCCTATGGACTTCAATCCTGCTGGTGGAGCCAGCGAGCCAGGCTGTCATCTCGCTGACGTTTGCTAACTACCTGGTGGAGGCTCTGTACCCGACGTGCCAACCTCCATACGATGCTGTGAGAGTCATCGCTGCTGCCTGCATCTGTGTGCTGATCTTTATAAACTGTGCTTATGTGAAGTGGGGAACTCTGGTCCAGGATATCTTTACCTACACCAAGATCTTttccctcatcctcatcattgCAATTggcattataaaaataattcaagGAGAGACTCAGAACTTTGAGAACCCATTCGAGGGCTCCTCCATGGAGGCTGGGAGCGTAGCACTCGCTCTCTACTCGGCACTGTTCTCCTACTCTGGCTGGGATACGCTCAACTTCGTCACGGAGGAAATTGTGAATCCGGAAAGGAATTTACCCCTAGCCATTGCCATCTCTATGCCGATTGTAACTATCATCTACCTGCTGACAAATGTGGCGTACTACTTGGTGCTGGACATACCTTCCTTCATGGCCAGTGATGCAGTCGCAGTGACTTTTGGAAATCAGGTTCTGGGACCCATTAGCTGGGTCATTCCCATTGCTGTGGCTATGTCGTGTTACGGAGGACTGAACGCCTCCATCATTGCTGCCTCCAGGTTGTTCTTCGTCGGGGCAAGAGAGGGCCACCTCCCAGACAGCCTGGCTCTGATCCATGCTAACCGCTACACTCCTGTCCCCGCACTACTCTTCAATGGTGTCATGGGACTGATCTTTTTGTGTGTGGAAGATGTATTCCTGCTAATCAATTACTTCAGCTTCAGCTACTGGCTGTATGTAGGATTATCTGTGGCGGGACTCATCTACCTTCGCTTcacacagccagacagacaCAGACCTGTGAAGcttacACTGCTCATTCCCTTCATCTATTGCTTGTGCAGTCTTTTCTTGGTCATCGTGCCCCTCTATAGTGACACAATCAATTCCCTCATAGGAGTAGCCATTGCACTGTCTGGTGTACCGGTGTACTACTTCTGCATTTACCTGCCTGAGGAGAAGAGGCCGAAATGGTTCAGTCAGCTCAATGCCGCCATCACCAAATACACCCAGATCGTGTGTTACTGCTGTCTAACTGACCTCGATGTGGAGCCAGAGAAGTTGGCTGAGAACAAGACTCAGTGATCTACGAAAACCAGCACACAGAATGAGTTCTCTACTTAAAGACACCATCGATTTTTGAATGTTTGAAGTGGACGTGAACGTTGGCACCATGGTGACTTTCTTAAAAGAACAATGATGTCCAGTGAGGTGCTGTAAAATTTGTACGTAtcagtcatttattttctgcatACACCATGTCTTCTTTCAACTTGTACTGTATGTTTGAAGTACTGTACCAAGAGTGACATGAAGAGAAAATGTAAtctgttttatctttattttttataagatTGTGATGACATTATGGTGCACTTTTGATAAATGTTTCTT

Function

GO: NA

KEGG:

id description
K13780 SLC7A5, LAT1; solute carrier family 7 (L-type amino acid transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87006 lncRNA downstream 23865 29540095 ~ 29540356 (-) True G73423
TU86901 lncRNA downstream 243887 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 346063 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 349170 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 374881 29188158 ~ 29189340 (-) True G73249
TU87022 lncRNA upstream 32187 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 95773 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 135672 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 137479 29712893 ~ 29713446 (-) True G73458
TU87043 lncRNA upstream 138585 29713999 ~ 29714410 (-) True G73459
XM_034303979.1 mRNA downstream 33540 29519091 ~ 29530681 (-) True eif4a2
XM_034303512.1 mRNA downstream 98201 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA downstream 99423 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA downstream 99510 29461041 ~ 29464711 (-) False kcnmb2
XM_026937224.2 mRNA downstream 111428 29442115 ~ 29452793 (-) True mfsd8l2
XM_026937014.2 mRNA upstream 1284 29576698 ~ 29592827 (-) True ripk2
XM_026935978.2 mRNA upstream 54556 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 54556 29629970 ~ 29666855 (-) True LOC113539879
XM_026936973.2 mRNA upstream 105830 29681244 ~ 29692555 (-) True si:ch211-13f8.2
XM_026936229.2 mRNA upstream 117964 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XR_003404077.1 other downstream 39160 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 39534 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 40309 29523723 ~ 29523912 (-) True LOC113540698
XR_003404076.1 other downstream 40755 29523394 ~ 29523466 (-) True LOC113540702
TU86878 other downstream 411840 29148638 ~ 29152381 (-) False usp33
XR_003403975.2 other upstream 149174 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 444092 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1166255 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1198049 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2291668 31867082 ~ 31870008 (-) True LOC113540068

Expression Profile