RNA id: XR_003404065.2


Basic Information

Item Value
RNA id XR_003404065.2
length 1869
RNA type misc_RNA
GC content 0.49
exon number 10
gene id LOC113540665
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29564221 ~ 29575727 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatttattgtttACTCGGTAAACACTCTTCTAACCATTGCCATTGCTGGACTGAACGAGTTTAGATGAGTTAACAGAAAACTTAGTAAAATCTTAGCGTATAATCCAGAAGTTTAAAATTGAAACCATTTTGTAATTACGTAACTATAATGTTTACATCTTCAACAGTAAAATGATAATTTATAGTCGAGTGTGAGCCGCAACACTGTTACAGGAgcagggtctctctctctctctctcgctcgctcgctcgctcgctgCCTCTGTTTGACTCTCTCCCTCTCAAAGCACAGACgtccaaaaataaacaaggGAACTTGGGGAACTGCGTGTCCTCTGTGTAGAAAAACACTTTGCCGTCTGGGACTGCTACACAACACACGCTCTGGTGCTCAGCTGAGCCTCTGGATCTCTAAAGATAAAATCTGCATTATTCATCTGCACGGTTCTTCTCACCAACAGTTAACTCCTTCTACTGTCATTCATCATCGTTAGAGGATAAACTCTTGGACATGCGCCGAGTACTTTGCCCCTCATTTAGGGCAGACTCGGACCCAGACCTGAAAGCACCAGTGGGTCCTGATGGCCAGGCAGAGAAGATGGTGATGAGGAGGGAGATCTCTCTTGCCAGCGGGGTGTGCCTCATCGTGGGAAACATGATCGGCTCAGGGATCTTTGTCTCGCCCAAAGGCGTTCTCCTACACAGTGCATCTTATGGCCTGTCGCTGCTCATCTGGGCACTCGGGGGCTTGTTTTCTGTCTTCGGTGCCCTCTGCTATGCTGAGCTTGGCACCACCATTGGCAAGTCAGGTGCCAGCTACGCCTACATTCTGGAGGCCTTTGGTGGATTCCTGGCCTTCATCCGCCTATGGACTTCAATCCTGCTGGTGGAGCCAGCGAGCCAGGCTGTCATCTCGCTGACGTTTGCTAACTACCTGGTGGAGGCTCTGTACCCGACGTGCCAACCTCCATACGATGCTGTGAGAGTCATCGCTGCTGCCTGCATCTGTGTGCTGATCTTTATAAACTGTGCTTATGTGAAGTGGGGAACTCTGGTCCAGGATATCTTTACCTACACCAAGATCTTttccctcatcctcatcattgCAATTggcattataaaaataattcaagGAGAGACTCAGAACTTTGAGAACCCATTCGAGGGCTCCTCCATGGAGGCTGGGAGCGTAGCACTCGCTCTCTACTCGGCACTGTTCTCCTACTCTGGCTGGGATACGCTCAACTTCGTCACGGAGGAAATTGTGAATCCGGAAAGGAATTTACCCCTAGCCATTGCCATCTCTATGCCGATTGTAACTATCATCTACCTGCTGACAAATGTGGCGTACTACTTGGTGCTGGACATACCTTCCTTCATGGCCAGTGATGCAGTCGCAGTGACTTTTGGAAATCAGGTTCTGGGACCCATTAGCTGGGTCATTCCCATTGCTGTGGCTATGTCGTGTTACGGAGGACTGAACGCCTCCATCATTGCTGCCTCCAGGTTGTTCTTCGTCGGGGCAAGAGAGGGCCACCTCCCAGACAGCCTGGCTCTGATCCATGCTAACCGCTACACTCCTGTCCCCGCACTACTCTTCAATGGTGTCATGGGACTGATCTTTTTGTGTGTGGAAGATGTATTCCTGCTAATCAATTACTTCAGCTTCAGCTACTGGCTGTATGTAGGATTATCTGTGGCGGGACTCATCTACCTTCGCTTcacacagccagacagacaCAGACCTGTGAAGGAGTAGCCATTGCACTGTCTGGTGTACCGGTGTACTACTTCTGCATTTACCTGCCTGAGGAGAAGAGGCCGAAATGGTTCAGTCAGCTCAATGCCGCCATCACCAAATACACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87006 lncRNA downstream 24246 29540095 ~ 29540356 (-) True G73423
TU86901 lncRNA downstream 244268 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 346444 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 349551 29213553 ~ 29215051 (-) True G73318
TU86820 lncRNA downstream 375262 29188158 ~ 29189340 (-) True G73249
TU87022 lncRNA upstream 31874 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 95460 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 135359 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 137166 29712893 ~ 29713446 (-) True G73458
TU87043 lncRNA upstream 138272 29713999 ~ 29714410 (-) True G73459
XM_034303979.1 mRNA downstream 33921 29519091 ~ 29530681 (-) True eif4a2
XM_034303512.1 mRNA downstream 98582 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA downstream 99804 29461041 ~ 29464798 (-) False kcnmb2
XM_034303513.1 mRNA downstream 99891 29461041 ~ 29464711 (-) False kcnmb2
XM_026937224.2 mRNA downstream 111809 29442115 ~ 29452793 (-) True mfsd8l2
XM_026937014.2 mRNA upstream 971 29576698 ~ 29592827 (-) True ripk2
XM_026935978.2 mRNA upstream 54243 29629970 ~ 29666855 (-) False LOC113539879
XM_034303335.1 mRNA upstream 54243 29629970 ~ 29666855 (-) True LOC113539879
XM_026936973.2 mRNA upstream 105517 29681244 ~ 29692555 (-) True si:ch211-13f8.2
XM_026936229.2 mRNA upstream 117651 29693378 ~ 29705682 (-) True si:ch211-13f8.1
XR_003404077.1 other downstream 39541 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 39915 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 40690 29523723 ~ 29523912 (-) True LOC113540698
XR_003404076.1 other downstream 41136 29523394 ~ 29523466 (-) True LOC113540702
TU86878 other downstream 412221 29148638 ~ 29152381 (-) False usp33
XR_003403975.2 other upstream 148861 29724588 ~ 29730857 (-) True zgc:110366
TU87233 other upstream 443779 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 1165942 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 1197736 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2291355 31867082 ~ 31870008 (-) True LOC113540068

Expression Profile