RNA id: XM_034304159.1


Basic Information

Item Value
RNA id XM_034304159.1
length 2850
RNA type mRNA
GC content 0.48
exon number 16
gene id ddr2b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29797070 ~ 29812557 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACATATACAACAGTTCATTTTCAGCCTGTGTGTGATCACATCAGCTCAtacacaaagaagaaaaaaaaaattattagcatGAGATGAGGTGCTGACTACGTGCAGGTATCCATTGGGGATGACTGGAGGCAAGATTCAGGATGAGGACATCTCAGCATCCAGCCAGTGGTCGGAGTCGACTGCAGCTAGATATGGCAGGCTGGATTTCGATGATGGAGATGGTGCATGGTGCCCCGAGGCAAATGGTCCGCGGAGGCAAATGGAGTTCCTGCAGATCGACCTTCGCATCCTGCACTTTGTCACCCTGGTGGGGACGCAGGGCCGCCATGCGGATGGTGCAGGCAACGAGTTTGCACAGCGCTACAGGATTAAATACAGCCGTGACGGCTCCCGCTGGGTCTCCTGGCGTGACCGTAAGGGCAGTCAGATCATCGAAGGCAACAAGAACGCCTATGACATAGTGCTGAAGGACCTGGAGCCTCCGATCATCGCCCGCTTTGTGCGATTCATGCCTGTCACTGATCCCACCACATCTGTGTGTATGAGGGTGGAGCTGTATGGATGCGAGTGGCTAGatggCCTCGTGTCCTACAGCAGCCCTGCTGGAGAAGAGATGGCCTTTGGTGGACAGCAAGTCTATCTTAATGACAGCGTGTATGATGGAGCCATGGGTTACAGCATGACGGAGGGTCTTGGGCAGTTGACTGATGGAAGTTGGGGTCTGGACGATTTCACTCAAAGCCACGTTTATGGTGTTTGGCCCGGATATGACTATGTGGGCTGGAGCAATGCTAGCTTTTCCAGCGGCTCTGTGGAAATGACGTTTGAGTTTGACCGTATCCGAAACTTTACATCAATGAAGGTTCATTGCAATAACATGTACACATCGGGGGTGAGAATATTCCAGAAAGTCGTCTGTTACTTCCACTCAGAGTCAGACTGGGAAGCCAAGCCTATTTCGTTCAAGCCCAAAGCGGACAATACAAGTCCCAGTGCTCGATTTGTCACAGTGGCTCTGGGGAATCGCATGGCCAATGCCATTAGATGTCAGTTTGCCTTCAGCGACACTTGGATGATGTTCAGTGAGATTGCTTTCCAGTCAGATACAGCAGTGTATAATACCTCTCTTGTTCCAACGAAACGTGGCCATCCGACAAGCACACAGCCAGGACTCGATCCCACTCATAAGATTGATGATAGCAACACGCGCATCCTCATTGGCTGCTTGGTGGCCATCATCGTCATCCTGCtggccatcatcatcattatcctCTGGAGACAGGTCTGGCAGAAGATGTTAGAAAAAGCGTCACGTCGGATGTTGGATGATGAATTAAGATCTCGTCTCTCGGGCCGCAGAGAAACTTTTTCTCATCGTCAATCGTCCCTGTCTAGTGATTCAGAATCTACCTGCACATACGAGAGAGTTTTCCCACTGGGATCCGAGTATCAGGAGCCATCCCGGTTACGGAAATCACCAGAATTTCAGGCAATGGAAAATCTTGCAGTCATGTCTGAATCGTCTGACCAGCATACATCAACCACTAAAGATGACGTCCCTCCCTACGCAGAAGCAGATGTGGCGAGGCAGCAGAAAGCAACGAGCAGTCATTGTTATTCCATTGCAGCAATCAGCATGCCTCCTGGACGAGATGGAGCATTGGAGGAATTTCCCAGGGAGAAGCTGACATTCAAAGACAAGCTTGGAGAAGGCCAGTTTGGAGAGGTTCATCTATGTGAGGCAAAAGGAATAAAGGATTTTATGAAGGAAGATGGCAGTGATATCAGGGATGAGCCTATTCTGGTGGCTGTAAAGATCCTCAGAGAGGACGCAACTAAAAACGCAAGGAATGACTTTTTAAAGGAGATCAGGATCATGTCAAGGTTGCGAGACCCCAATATTATTCGCCtgctggctgtgtgtgtagagagcGACCCCCTGTGTATGATCACGGAGTACATGGAGAATGGAGACCTAAACCAGTTCCTCTCTCTCCACAAGCTTGAAGATTTGGGACAAGACCAAGAGTGCACAGCCACCATCAgTTACGGTGTCTtgatcaacatggctgctcagaTCGCTTCAGGTATGAAGTATCTGTCTTCTCTTAACTTTGTGCACCGTGACTTGGCCACACGTAACTGCTTGGTGGGGACAAATTACACCATCAAGATTGCAGATTTCGGCATGAGCAGGAACCTGTACCGCGGAGATTACTACCTCATCCAGGGTCGAGCCGTGCTCCCTATCCGCTGGATGTCCTGGGAGAGCGTTCTCCTGGGCAAATTCACGATGGCCAGTGATGTGTGGGCCTTCGGTGTAACACTCTGGGAAATGGTTACTCTGTGCAAAGAGCAGCCATACTCACAACTCTCAGATGATCAAGTGATCGAGAACATGGGCGAGTTCTTTCGAGACCAGAACAAGCAGGTGTACTTGCCGAAGCCTTTGTGTTGCCCCGATGCCATCTACAGCCTCATGCACAGCTGCTGGAGGAGAAACGCCAAAGAACGTCCAACATTTGAGCAGATCCACGCTTCTCTACTCGAATTCCAGGCTGAAAATGTGCTGAGTGATGAATCTGACACAAATACGCAGTTCTGAACTTTTCCTTCCAGCTGTGCATAATAGCAGGATAGGAGCTGTGAAGAAATTCtgcatatataaataatgtaaaaagctGGTTGTTCCATGAGTTATATGAATTTTGTATGAATATAAGAATGTTTGTTATTCATGTTCCCTTCATTAATCTGTATTACATAGATAACACCTATTATAAGTCTGACATTATTCTGCACACTTTCTCTGAACTTtgttaaatgaacaaacaataaacaataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87071 lncRNA downstream 3426 29792212 ~ 29793644 (-) True G73485
TU87065 lncRNA downstream 16938 29778555 ~ 29780132 (-) True G73481
TU87028 lncRNA downstream 30955 29765747 ~ 29766115 (-) True G73444
TU87032 lncRNA downstream 31438 29765124 ~ 29765632 (-) True G73448
TU87063 lncRNA downstream 33279 29763505 ~ 29763791 (-) True G73479
TU87081 lncRNA upstream 39171 29846674 ~ 29846891 (-) True G73492
TU87217 lncRNA upstream 121761 29929264 ~ 29929489 (-) True G73607
TU87230 lncRNA upstream 169168 29976671 ~ 30025036 (-) True G73618
TU87275 lncRNA upstream 288287 30095790 ~ 30097973 (-) True G73652
TU87279 lncRNA upstream 293937 30101440 ~ 30102870 (-) True G73656
XM_034304044.1 mRNA downstream 2928 29766208 ~ 29794142 (-) True xpr1b
XM_026936015.2 mRNA downstream 48957 29732265 ~ 29748113 (-) True cdc14aa
XM_026935844.2 mRNA downstream 66214 29724588 ~ 29730856 (-) False zgc:110366
XM_026935845.2 mRNA downstream 66214 29724588 ~ 29730856 (-) False zgc:110366
XM_034303650.1 mRNA downstream 91388 29694390 ~ 29705682 (-) False si:ch211-13f8.1
XM_026937273.2 mRNA upstream 6024 29813527 ~ 29825141 (-) True nos1apb
XM_026936933.2 mRNA upstream 26159 29833662 ~ 29835191 (-) True rgs5b
XM_034303426.1 mRNA upstream 61088 29868591 ~ 29899526 (-) True brinp3b
XM_034303703.1 mRNA upstream 96241 29903744 ~ 30014565 (-) False LOC113540096
XM_034303702.1 mRNA upstream 96241 29903744 ~ 30014565 (-) False LOC113540096
XR_003403975.2 other downstream 66213 29724588 ~ 29730857 (-) True zgc:110366
XR_003404065.2 other downstream 221343 29564602 ~ 29575727 (-) False LOC113540665
XR_003404077.1 other downstream 272009 29524989 ~ 29525061 (-) True LOC113540703
XR_003404071.2 other downstream 272383 29524509 ~ 29524687 (-) True LOC113540697
XR_003404072.2 other downstream 273158 29523723 ~ 29523912 (-) True LOC113540698
TU87233 other upstream 212003 30019506 ~ 30022525 (-) True G73619
TU87613 other upstream 934166 30741669 ~ 30743826 (-) False LOC113540055
TU87656 other upstream 965960 30773463 ~ 30775819 (-) True ccl20l
LOC113540068 other upstream 2059579 31867082 ~ 31870008 (-) True LOC113540068
LOC117597010 other upstream 2063015 31870518 ~ 31871874 (-) True LOC117597010

Expression Profile