RNA id: XM_026937308.2


Basic Information

Item Value
RNA id XM_026937308.2
length 3917
RNA type mRNA
GC content 0.41
exon number 20
gene id camk2d1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20935685 ~ 21012256 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAAGCAGGAAGAGGCGAAAGCGGATCATTGACGTCCGAGCAGCCGCAGGAGCAGAGGTGCGGTGTCGACGCTCTCAACTTCACTTACGAGCGAGCCACCTGCAGAACAGAGCCACAACACACTACCTGCTCAGAGAGCTGCCCTGGAGCTGACACCCCGgactttttcttctctcctcctcactGAGGCGTTTACTTTCATTTCGTGAAGCACAGCTGAGGAAGCGAGACGTTAGACCTGACTGCTGCTCAGATTTGTGCTGGCTGTCTCTCTCAGCATGGCTGCGACCACCTGTACCAGGTTCACCGACGAATACCAGCTCTATGAAGAACTGGGCAAAGGAGCCTTCTCAGTGGTGAGACGATGTATGAAAATCTCCACTGGACAGGAGTACGCTGCCAAAATTATCAACACCAAGAAGCTGTCTGCCAGGGATCACCAGAAGTTGGAACGTGAGGCTCGCATTTGTCGTCTGCTTAAACACCCCAACATTGTGAGACTCCATGACAGCATATCCGAAGAGGGATTCCACTACCTCGTCTTTGATTTAGTCACAGGAGGGGAGCTGTTTGAAGATATTGTGGCCAGAGAGTACTATAGTGAAGCCGATGCCAGTCATTGCATTCAGCAGATCCTTGAGGCCGTTCTCCACTGCCACCAGATGGGAGTGGTCCATCGCGACCTGAAGCCAGAGAACCTGCTTTTAGCCAGCAAACTCAAGGGAGCTGCAGTGAAACTGGCTGACTTTGGCTTGGCCATTGAGGTGCAGGGAGACCAGCAAGCATGGTTCGGATTTGCTGGCACTCCTGGTTACTTGTCTCCTGAGGTGTTAAGGAAGGAACCCTATGGGAAGCCAGTTGATATGTGGGCCTGTGGTGTGATTCTCTACATATTGCTGGTGGGTTATCCTCCGTTCTGGGATGAGGATCAACATAGACTTTATCAGCAGATCAAGGCTGGTGCATATGATtTTCCTTCTCCTGAGTGGGACACGGTGACCCCAGAGGCCAAAGATCTGATTAATAAGATGCTGACTATCAACCCTGCCAAACGCATTACTGCTGCAGAGGCCCTCAAACACCCATGGATCTGTCAACGTTCTACAGTGGCCTCCATGATGCACAGACAGGAGACTGTGGAATGCCTGAAGAAGTTCAACGCCAGGAGAAAGCTAAagGGAGCGATCCTGACCACCATGCTCGCCACAAAGACCTTCTCAAAAGGGAATCCATACAAGAAGCCTGATAGTGTTAAGATCAACAACAAAGGCAACGTAGTCACCAGCCCTAAAGAGCCAGTCCCCTCTCCTGCTCTGGAGCCTCAAACTACTGTTATCCACAATCCAACTGACGGAAACAAGGTAGAGTCCTCAGAGAGTGCCAACACCACCATAGAAGATGAGGATGTGAAAGCACGGAAGCAGGAGATTATCAAAGTGACCGAGCAGCTGATCGAGGCCATCAACAATGGAGATTTTGAAGCTTATACCAAGATCTGTGACCCTGGACTGACCTCTTTTGAACCTGAGGCTTTGGGGAACCTGGTGGAGGGAACAGACTTCCACAGGTTCTACTTCGAGAACTctcTCTCCAAAAGCCACAGACGTACCATCCACACTATCTTGCTGAATCCTCACGTGCACCTGCTGGGAGAAGACGCTGCCTGTATAGCCTACATCAGACTCACACAGTACATCGATGCTAACAACATGCCTCGCACCATGCAGTCAGAGGAGACTCGGGTGTGGCATCGCCGTGACGGCAAGTGGCAGAACATTCACTTCCACCGCTCAGGCTCGCCAACCGTGCCCACCAATTAACGAGGCGTCCTGAGCAACGCTGCTCAGTCTAAGGGACTTCATGTTAGATGGCCACCGAGTGTCTGCTTTATTCAAACCCCACCTTTACAACTTCTCTACCCTGTCAGTCTTGTTTACATATCATCACTGCTGGACTTTAGCCTACATACAGGTGGGGAATTAATATCATTTTGTATTAggacatgtgtgtatgtgtgctacTCGCACGCTCTCCTCATAAACCATTGATGTTGAAAAcgtatacattttttttcttttttttttttttttaaatttaatgtttccATTTTCTATGGTGTGAAAGTAGGGAGTCACACTTGCTGATATATCTTTGGGTGTGTGGGtacatcaggaaatgaaatgtttgatCGCTGTACACAATCAGAtacaaagtcaaacagtacACAGACAAATCTGGGTGCATGTATGACATGATCATATTAGAGTGATTATTAATCTAGGCACAATATCCATCACTGATCTTGAGGATATGATTAACAGCAAATCACAGCCACTTCAGTCTTGTTTCAGTGCTTTTCTATCTTAAGTGCaatatggcagaaaaaaaaaattatgaatatgACAAATGagcttgcttttgtttttttggtgatgTTTTTGTGAAGTTGTGTGAAGTGCTATTCCTGCTTTATCTTTTAGAGAATTGACAGTTGACCGTAATCTTAGTTCTGCGAGCTTTGTTCTGTTTTAGGCTGCTATGGCCTAATGGGTTTAGCATCAGTAATGTGTAAAACTGACAAAGGAAGCACATTAGCCTACAGTTCGCTATTTTATTCTGATGCTTTCAAACTCATCACATTAACACAGtagaaaaattgaaaaatttcAGTTAAAGAATGTACTTTACCAATCAACACGAATAACAGGTAaatcaaactgttttatttcagtcaCTTATTGTGAGTTTTATGcttctgttttgatttttatattgtttactAACACTTGATGGGggtattctgaaaaaaaatgtgttttctgtattttttcacTCCTTCcttaattaattagcattagcTGTTATCATGTAAAGTATGAAACATCTTTTACCAACtcattttacttttatgtaCTTCTTTGTTCCTCAGTGTCATATGTATGCTCTTGTGATGGTTCCCTGCTCAAGGGTGAAGTAGAATAAATGGTTTATGCTTTATATTCCAGACTGTCCATTTAAACTGAATGAGAGATGAGTAGTTAGTCCCATAAAGTGGTTGCAAAACCTATTACTATTATCAGTGCAAaattgcaacaaaaaaaaatgcaaaataggaAAATTTGTAAGTAGAAACATTTCACAGATTAATATAAGCACAGTTGATATTATTTGGTTTGATAAGTATTGGATTTAAATAAAGCTTGAGTTTGTTTACTCTTGATTAAGACCTAATGCTTTATAACATCAGTTTGTGAAAACCATAGGGAGAAAACCTGAATTTGAGACTGATAATCAATGTTGACTTTAGATTCAGGGTCTGAAATGCTGTCAGCGGTTTGAgacatgaagaaaatcagttgttattttgttccattttatttgctttattttttaattttagttatttttgttactttttttattctagTCCAGTTCCCTTTGAGCTTTTTTTGCTGTAACTAGAAAAAAATCCCCAGTTACACAAACCTGTACACTAATCAGAAGTACAAATACTCAAGCAGTTAAAAAGGAcacaataaagtaaataaataaactgtgaaAACACCCTTGTGTTTGTCagttaataaatattcatttaagaTTAAGAACATTAAGAGATATAAATAGTTTGTATATGTGGATGCATAGAACAACATATTACTGTGCACAGAAAAACATATTACCACCACaatgcatgaataaaatattcctgcctaatttttttttttttttttaatgttaatcttCAATTGGGTTAAAAGTCAGGTCTAATGGAAACCTGTTAGCAATTTTGTTGTTTCTGTACATAAAAaagaataagtaaataaagtaacggtttttctttcatttttttgtgtaaacatttttataaggTGTGTcccatgttaaataaaaagcCCCAGGCACCAGCATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80850 lncRNA upstream 39730 20864878 ~ 20895955 (+) True G68192
TU80696 lncRNA upstream 242574 20692263 ~ 20693111 (+) True G68070
TU80695 lncRNA upstream 242632 20692263 ~ 20693053 (+) False G68070
TU80678 lncRNA upstream 300120 20635348 ~ 20635565 (+) True G68054
TU80554 lncRNA upstream 453930 20480600 ~ 20481755 (+) True G67958
TU80969 lncRNA downstream 176275 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 193489 21205745 ~ 21209324 (+) True G68304
TU80993 lncRNA downstream 221769 21234025 ~ 21234258 (+) True G68313
TU81190 lncRNA downstream 303999 21316255 ~ 21316515 (+) True G68435
TU81189 lncRNA downstream 308889 21321145 ~ 21321406 (+) False plag1
XM_026936124.2 mRNA upstream 9627 20911650 ~ 20926058 (+) True arsj
XM_026936148.2 mRNA upstream 42154 20852744 ~ 20893531 (+) False pde5ab
XM_026935832.2 mRNA downstream 177317 21189573 ~ 21194690 (+) True ggh
XM_034303658.1 mRNA downstream 179121 21191377 ~ 21194690 (+) False ggh
XM_026937031.2 mRNA downstream 271698 21283954 ~ 21287359 (+) False penkb
XM_026937030.2 mRNA downstream 271703 21283959 ~ 21287359 (+) True penkb
XM_026935823.2 mRNA downstream 285881 21298137 ~ 21303615 (+) True sdr16c5b
trnaa-cgc other upstream 583200 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 780914 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 834587 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1106795 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 1107303 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 8002 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 315090 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 616820 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 616820 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 740160 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile