RNA id: XM_026937314.2


Basic Information

Item Value
RNA id XM_026937314.2
length 1928
RNA type mRNA
GC content 0.41
exon number 7
gene id imp3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27460268 ~ 27466505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACAATACGTACTGCGGGAAAACGTGCGCGCGAGGGGTCGTGACTGTCCATCaggttggggttttttttagagCCGGTTTATAAAGACTTTAAATTTGTGTGGGGGAAAATGGTACGTAAATTAAGATTTCACGAGCAGAAGCTCTTAAAGAAAGTAGATTTTATTAACTGGGAAGTGGACAACAATCTGCACGAGGTGAAAGTGTTGCGGAAATACCGCATCGAGAAGAGAGAAGACTACACCAAGTACAACAAGCTGAGTCGCAGCATCCGAGAGCTGGCCCAGAAAATCCGTGACCTGGACGAGAAGGACGGTTTCAGAGCTCAGTGCACGGCACAGCTGCTGGAGAAACTCTACAGCGTGGGCCTGATCCCAGCCAAACAGAGTCTGGCTCTCGCAAATAACGTCACCGCGTCATCCTTCTGCAGGAGGCGGTTGCCGTGGGTGATGCTGAAACTGCGCATGGCTCAGAACATGAAGGACGCCATCACGTTCATCGAACAGGGACATATTCGTGTCGGCCCTGAGATCATCACAGATCCTGCATTTCTGGTCACAAGGAACATGGAGGACTTTGTGACCTGGGTGGACTCGTCCAAGATCAAGCAACACGTCATGAACTACAATGAGGAGCGCGATGACTTTGATCTCGTGGTTTAAAGCTGCTGTAGTGATTTTCAGCCATCCGGAGAGCCAGAGCAGGGAATCGGGAGCTGCTCGGGATCTACACTCAGATGAACAACCCGGAGAACAAGCGAACACGTCATCAACACATTTCTGCTAAGAAacgtgtttacacacacacatgcgtgaACAGGAGAGTGCTAGATTGAGAGCTTTTACACCCTGGTATTGTGTTGAGtggaaaatatttattagagaaggataaaaatgtaaatgttttcatggacATCAAAAGTTTATACAGTTTGTAATACAGGTTTTCTATCTGATAtgaacatcattttttttttttttttttttttttttttttttaacacatcagaatattttattttttcacataatACATTATTTCAGGTAACCATTATTGTTCAGTTTAacgtcatttttaaataatgtgatattGAAAGAAAAAGGTGTATCCTGAAAACCGTGTAAATTTAAATACTACCGCACAAACGAGAACAAAATGCAATACACAATAGGTCACATCACTTCTGATCATAGAGAACTGTCCATCATCATAATATTGCGTACTGAACATCGCTTTATGTATCAGTCCATCAGCTAGCAATCTAATTAGAGATCAGCACAGAGAGTTGGTTCGTAAAACTCGTTTTAATGGAATAGGGACCAAACGTAGAGCTACATTTCAAACAAGTCATTGCTAACACAATACAGAAAGATCAATAACAtcttaatttgcataaataattaaataaaatacttcaagTGTTGCCAGAAGCGGTGATCTGCGGGGTCCAGGCACCTTTCGAAAGTAGGCTATATTGCATACGACATTAAAAAGGCCACAGTTTAGTGACGATAGTTCAATGCTAACCctgtgaaatgcctgctgaaatttGATTGGCTGAAGGTGGCCATATGTTTTTAGTGTAATCAAGTCATCATTAGAAACTCACTCACAGATTAGCGCAAAGATGAAGTACACTAAGTCTCAGCTCTGtgaaaacatacaaatatgCATTCCTTGAGTTGCCTTTTAAAGAAAAGGGGTGGAGCTtgtttcagggccagaaaaatctATATAGTGCCTTATATGAAGAACTGAGCCAAATGATcagaatgtaaatattaaaactccCGGTGTTTCTACAGTGTCTATAGAAGGGGAAGGGTACAAGTGTTACCCATTGTAGAAACGCtttcaaacatcacacacactgcaactttgactaaataaaaattgattCAGGGATCATTTTCACCCAAAACATCAAA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85362 lncRNA upstream 71 27459670 ~ 27460197 (+) True G72012
TU85353 lncRNA upstream 31046 27428419 ~ 27429222 (+) True G72005
TU85334 lncRNA upstream 53870 27405579 ~ 27406398 (+) False sgip1b
TU85328 lncRNA upstream 79196 27380848 ~ 27381072 (+) True G71980
TU85325 lncRNA upstream 88590 27371473 ~ 27371678 (+) True G71977
XR_003404004.2 lncRNA downstream 17315 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA downstream 17326 27483831 ~ 27487711 (+) False LOC113540179
TU85494 lncRNA downstream 86622 27553127 ~ 27555706 (+) True G72118
XR_003404048.2 lncRNA downstream 89580 27556085 ~ 27559110 (+) False LOC113540592
TU85491 lncRNA downstream 89699 27556204 ~ 27559102 (+) False LOC113540592
XM_026936528.2 mRNA upstream 13020 27441509 ~ 27447248 (+) True fam78ba
XM_026935918.2 mRNA upstream 33574 27421285 ~ 27426694 (+) True bcl6ab
XM_026937130.2 mRNA upstream 47488 27410223 ~ 27412780 (+) True tctex1d1
XM_034304153.1 mRNA upstream 54458 27384807 ~ 27405810 (+) False sgip1b
XM_026936474.2 mRNA downstream 1543 27468048 ~ 27477673 (+) False zgc:55943
XM_034303667.1 mRNA downstream 1778 27468283 ~ 27477673 (+) True zgc:55943
XM_026936475.2 mRNA downstream 1778 27468283 ~ 27477673 (+) False zgc:55943
XM_026935807.2 mRNA downstream 29343 27495848 ~ 27508199 (+) True abi1b
XM_026935808.2 mRNA downstream 29343 27495848 ~ 27508199 (+) False abi1b
XR_003404108.2 other upstream 347014 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 796186 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1084489 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1096035 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1167484 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 22748 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 90012 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 91260 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 154100 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 154806 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile