RNA id: XM_026937320.2


Basic Information

Item Value
RNA id XM_026937320.2
length 1617
RNA type mRNA
GC content 0.55
exon number 7
gene id znf622
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30199694 ~ 30204010 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTTTCATTTCCGGTTCAAAGGTTACAGCTGCTTTTCTCTGGTCATGTAGGAACGTGCGTTTAACTCGAGTAGAGAAAgcgttattatttattaaacagtggATAACTGGAACCCAGCCGTGATGTCTTCGTACACGTGTATCAGCTGCCGCGTGCAGTTCACCGACGCTGACGTGCAGCGTGCGCACTACAAGACCGACTGGCACCGCTACAACCTGAAGCGCAAGGTCGCCAACATGCCACCAGTCACCGCTGAGAACTTCCAGGAGCGCGTCCTGGCCCAGCGTGCGGCCGCCGAACAGCAGCTGGCAGACACGCACAGCCTCGCCACCTGCACCACCTGCAACAAGAAGTTCTCCAGCGCCAACGCCTACAACAACCACCTGCAGTCGCACAAGCACCTGCAAGCTGAGAAGAAAGCCATAGCCGTCGCCCAGGAGGCGGTGCAGCGCATGAACGAGAAGAACCTGGAGAAAGGAGCCGAGCTGGACAAGGACGCTCAGAACGAGGCGATTCAGAAAGCCATGAGGGAGGGGCTTAGGCAGAAACAGAGATACGCCCACTCAGAAGCCACGCCCACGGAGAGGCAGGGTAGGAAGAGGCTGGATAAAGCGCCACGGCTGGAGTGGTTTGAGAGGCAAGCCAAGAAGATCGCAactgaggaggaagaggaagaggaggaagatgcAGCAGATGAAGAATGGGAGGATTTTGACGAagacgacgacgatgatgatgatgagatggagGCCGATGAAGAGGAGCAGATGGCGGAGGACAGCGTGGCCACGCCCACTCCCTCTCCAGGCTCCATCCCCGTGACCGACTGTCTGTTCTGTTCGCACCACTCGCACTCTCTGAGCAAAAACGTGGCCCACATGACCAAAGAGCACAGCTTCTTCATCCCCGACATCGAGTACCTGGTCGATCTGAGAGGACTCCTTGCATACCTGgGAGAGAAGGTGGGTTTCGGCaaagtgtgtttatggtgtaaCGAAAAAGGCAAGTCGTTCTACTCGACCGAAGCGGTGCAGGCGCACATGAACGACAAGAGCCACTGCAAACTCTACACCGACGGAGACGCGGCGCTCGAGTTTGCCGATTTCTACGACTTCAGgagTAGCTACCCAGACGCTCATGATGGAACTGATGTAGAAATGAAGGACGGAGAGCTTCCCGATGAGAagacggtggagtttgatgatgacaCTCTAGAGCTCACGTTGCCGTCCGGGGCGAAGATCGGTCACCGCTCGCTGATGCGTTACTATAAGCAGCGTTTCGGGATGCAGAGGGAGCTGGTACCTGTACAGAACCAGCGCGCTGTGGGCCGAGTGCTGAAGCAGTACCGGGCCCTCGGCTGGGCtggagaagctgGTAAAGGCTCGGTGCTCCAGCAGCAGAAGGACATGCGGTACGTACAGAGGATGAAGTCGAAGTGGATGCTGAGGACGGGAATGAGCAACAACGTGACTAAGCAGGCCCACTTCAGGGCCCAGGTCATGTTCTAATCCTGGGTTAAATGATCACTTTATGAATTTAGGAGCCTAAGAGACACTGGGCCCCTGGAGACCCGGCGTGAGGTTCTGTTTAACGACCTTATTCACTTTCTTAAC

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87200 lncRNA upstream 7360 30150455 ~ 30192334 (+) True G73590
TU87186 lncRNA upstream 64829 30134652 ~ 30134865 (+) True G73578
TU87184 lncRNA upstream 68987 30130480 ~ 30130707 (+) True G73576
TU87179 lncRNA upstream 76444 30123023 ~ 30123250 (+) True G73571
TU87176 lncRNA upstream 81202 30118006 ~ 30118492 (+) True G73568
TU87379 lncRNA downstream 273676 30477425 ~ 30478250 (+) False uggt1
TU87380 lncRNA downstream 273676 30477425 ~ 30478250 (+) False uggt1
TU87498 lncRNA downstream 277673 30481422 ~ 30481625 (+) True G73839
TU87503 lncRNA downstream 389401 30593150 ~ 30593609 (+) True G73844
TU87504 lncRNA downstream 389485 30593234 ~ 30593609 (+) False G73844
XM_034303855.1 mRNA upstream 5120 30139003 ~ 30194574 (+) True zgc:110158
XM_026937105.2 mRNA upstream 89859 30097705 ~ 30109835 (+) True keap1a
XM_026937116.2 mRNA upstream 149204 30045895 ~ 30050490 (+) True ebi3
XM_034303701.1 mRNA upstream 177123 30014655 ~ 30022571 (+) True blvra
XM_026936317.2 mRNA upstream 198349 29998504 ~ 30001345 (+) True rgs13
XM_026936332.2 mRNA downstream 1449 30205198 ~ 30211975 (+) True d2hgdh
XM_026937072.2 mRNA downstream 21294 30225043 ~ 30237040 (+) True otomp
XM_026937167.2 mRNA downstream 135121 30338870 ~ 30447632 (+) True hs6st1a
XM_034303971.1 mRNA downstream 251008 30454757 ~ 30478293 (+) True uggt1
XM_026936553.2 mRNA downstream 577409 30781158 ~ 30845103 (+) True epha4a
TU86682 other upstream 576657 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 1287590 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2578311 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2579017 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2641792 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 542382 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 542382 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 857981 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1147512 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 1566073 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile