RNA id: XM_026937326.2


Basic Information

Item Value
RNA id XM_026937326.2
length 5487
RNA type mRNA
GC content 0.43
exon number 26
gene id LOC113540685
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26983741 ~ 27013645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCGCTCCTCCTGGCTCTGCAGAGGGCGTTGTTGTCACTCCACCTCAATGTATTCACCTCAATGTCATCCTTTAAGATGACATTCTAGTCATCATGTTCATGTGGAGTTTGAGTCATGAACAAAATCCAACCAGTGGAAAATTTTTCAGTCAGGAAGCAGGAGTAGCAGCGGAGCGCCTTGAGGAAACACACCCAGAGGAAGAGTTTCACTAACTTCCAGTTGAATCTCATTTCACTCCTCCTTAACTCGCTGTGATAAGGAAGAGCTCGGAAAGAAACATGaaaaaaagaggagTGCTCAGTGGATTCAGAAAAACATCATCCAATTCTACCACACACGAACAGaataatcTGTCAGTTGATGGAGAGTCACACAGCAGCAGTGCTGATCTTTCTGAAAGGTCAAGTGGAATGCTCAGCAGCTTTTTCAGGCACTCTCCCAAACTGGCTCAGAACTATGCTCATTGCCAGggtgctGAGAGCTCAGACATCACAGAGAAGAAAGTCAGAGCAGATGAAATCCCTCGCGTCCCACCAAGACCCAGTGAGGAGGAGCTCAgaaacaccatcacacaccgCCTGAGTGTGAATCCAGCTGATGTGGATCATAGTCAGggAGCTGGGAGCATAGACATCAGAGAGAAGAAAGCCAGAGCAGATGAAGTCCCTCGCGTCCCACCAAGACCCAGTGAGGAGGAGCTCAgaaacaccatcacacaccgCCTGAGTGTGAATCCAGCTGACATGGATCGTAGTCAGggtgctAGGAGCTCAGACATCACAGAGAAGAAATCCAGAGCAGATGAAACCCTTCGCGTCCCTCCAAGACCCAGTGAGGAgGTGATAAACTCCATCACACACCGCCTGACTGTGAATCCAATTGATGCGGCTCATAATCAGGATTCTGTGAAGAGCAGAGAGGAAGATGAGGGGATGACTACAGACAAcaaggaggagtgtgtgaacgAAGCTGCTGCTGCGGCTGACAAACAGAAAgatgATCTCTCAGTTGATGGAAAGTCACACAGCAGCAGTGCTGATCTTTCTGAAAAGTCAGGAGGAGAGCCGAGCGGCTTTTTCAGACACTCTCCCAAACCGGCTCAGAGCTGCACTCATGGCCAGggtgctGGGAGCTTAGACATCACAGGGAAGAAAGACAGAGCAGATGAAACCCCTCGTGTCTCTCCAAATCCCAGTGAGGAGGTGATGAACTCCATCACACACCGCCTGAATATGAATCCAACTGACATGGATCATCATCAGATGGAAAATCAGGACGTTGGCGAGCGCACTGAGGACCacagtgaggagtgtgtgaacgAAGCCGCTGCTACagttgagaaagagaaagtagtGccaaagaaaaagaaagtaaagaaaaagaagaatccCTTCATGCCTCATGTGACAGCTAAGagtAAAATGAATCAGAAGAGGAGCGGAGAAGATGGCACTGAGGTTTTAGAGAAGAACTCCCTCATGGAGCAGCTGAATGAGTTTCGACTGGATCGAGTTCATAGCGAAGACAAGGAGGATCTTGATAGCCTCATGGAGTGGTGGAGTACGGTAAAACAATGGGAGCCGATGTCCAACAATGAAGATATGACGGAAAAAGAGGAGGCTACGGCATTTGCATTAACAGCCGAAAAGGTGCAACGAGGCATTCGTGTGTTTAATCAGCTGTTTTCAGAGCGAGCAGAAGCTCTTTGGCAGCACATCATTGACCTCAACCTCATTGCTGATGGTCTGGACCGCTTCAACAAAAGGACCAAAGTGGCCCAGATCACAGGTGGCTCCACCAGCGCTGTTGGGGGTGTGGCCACTATAGCAGGCCTTGCCCTGGCACCTGTTACTATGGGAACATCCCTGATCATCACAGCAGTGGGCCTGGGCGTGGCTGCGGCGGGCGGGTTAACATCGGCCTCGGCCGGTATCTCCAACACTGTCCATGGCTCAATGGACCGCAAGAAAGTGGAGCGCATTGTGAAGGACTTCCAGAGCAAGATGGCTGACATTGACAAATGCACAAGATTCATCAAACGAGGCATCGAGAACCTGCGAGAGTTAAATGCTCCCAGGGTGAAAAAGCTAAAGGTGTATGATAATGATTTCTCTGGAATCAACAATATCTACGAGGACAGCGCCATGGCAGGCAAAGCAGTACTTATCAACGCCAATGAGATCACCAGGTTAACACaagtcaccatggcaacaggtGGCACAGCAGCCAGAGCAGTGCAGGTTGCAGCCATGGCAACAGGCGTCCTCACCGGGCTCTTTGTTGCCATGGATATTTACTTTGTGGCAAAGGATTCTCACGAACTTAGGAAAGGAGCCAAGTCGGAATTTGCCAAAAAGATCAGGGAGGTGGCAGAGCAGCTGCATCAAGGACTGGTAGAGCTCAATATCATCAGAGAGGAGCTGCAGTGTTCAGAAAGCTCCACCTCCTCCAACACCTTCACAATGTCCACCTCCAGCCCCTCAGCCTCCACTTACGCCACCTCATTGACCTCCTCTTCGTCCACTTCTGGCATCTCTAACTCCTCTAGCACCTCAACCTCCATCGCTTCACTCTCCTCCACTTCTCCCTGCCCCTCCATTTCCTCTTCTCTTTCACAGAACACTGAAGCACACATAGAACCTCTAGCTCAGTCCTGACACAGTCCTTAAACAAATTGTATGTCCTCCTCTTCCATCTCCAAATGATACACCTCCATTTTCTCAGTGTCCTTATCCAAAACCTGCACTTTCTTATTCTCCTCTATGACTGGCTCCtaaattaacaattaacaatgcTACCACCACATTCTGCACCTTCTCCACCACATCCTCCTGAATCTCTTCCATTTCATCCTCCACCTTACCACCTCTCCCACATCTTGCACCTTCTTCCCCTCCACTTCCATATCCTGCACCTCTACATTCACCCCTTAGACCTTCTTCACCTCCAGATCCACCTTATGTATCTTCTCCACCTCCACTTCTTCTGTCTCCACATCCACGTCCTCCACTTCCACATTTACAACTTCTCCACCTTCAGTCATATGACACATCTTGCAACTTCTCCACCTACACTTTCATATCCACCTTTTACACATGATCCTCCACCACCTCATCCACCGCCTGCACCTTCACATTTAAAAGGAACAGTCATTAAACATACTTTAAACCTAGTACACTCCTACATTGCATACTGTAACTCCACCTCCTGCATCACATGTTCCACCTCTACCCCCTTAACCTCCCCTGCATTTCTTCCTCCTTATGCTTCTCTTCCTCCACCTTTCTTCTCTAGCACCTCTGCCTCCACTCCTGAACGTTAGGCATATACATATCCATATCCTGCACTTCCTCCTCTACCCCACCTCCGGTGTCTCCTCCACTTTCTTCTGCACCTTTTCCTTGATCACAATCTAATCGAACTCCATTCAGTTCTATTAGACATTCTCGACTCCTCCACTCAGCAGTGATACCAAACATTGAAACATTGAAACATTCCTGCTGTAAACACTGCTCTCTTGTTACAGACACTGACAGTAAGAATAACTCAGACTAATTCATGTCTACCGTTTTATTAACATCTTGACTAGCCTTCTGCGATATTGATTTTCGCCTGATcatcattattttccaatttaaaatatcatgattaattataattttccaGAACCCCTAGCCTTAAAATGAAAACGAGCATTTCTACCATGTCCGATAAGGAGAGGGATGTGAGGCGTAATAATATTACCTGTGCAGCTGTGCAGCCAGGAACTGTGGGCAAAAAACTCAGCTGtatggtggatttttaagtgattctgcagtgatgtgcagtaaataattaaaaaaacctaacagcacattttgatataatccttttacaaattgATTGCCTAATGTTCATGTATCTGACATTTTCACAGTTCATGCTGCTCATTGTTGTGAAGGAGAGCACCggtcaaaaagaaaaaaacaaaacggtTGCTTTCATCACcttatcatcaccattatgaTTATGTGTAAGCGTTTGCTTTgacttatttcattttttgggTCAAAATTGAAAAACAATTTTGGCTGAAATTTTTTGctggcatccctaataaatataataaactaaataaatatatacatgtcTAAAGTCgaacatacactgatagattttattttatattaatgaactcaaaacattgcccatttaccttgacagaaagcaagggATGAGATTAAGGAATGGGCAGGGGATGTAATATGAATGTAATATCGTGTAGGGAcgataataatgttatattgcacaagcctagtcctgattatttcacatttcagcCAGAGTACTAAAAaacactgtatgttttttttaaaagcttgtaTCATCTGAGACATCTCATGATTTGTCTTTTTTGCACATTGATCTCTTGGTTGTAGATATTCCACTCTGCCTGTAGTCGGTTCATCAGTTTTCTCAGCATTTTTACTATATGTTACATGATGAAACTGTTTGacttctgtttctgttcttttgtctttaaaactgcagacaaatcaaaacaactgacaaaattaataattaattcttTATACACAGTGGAGTCCAAAAGTTTGCattgttttctaattttatacaaactgtttcattacaaattatattactggcAATAAACATGAGCCTCAGTGGAAGAGATAAGAACTCAAGGAAAATCTCACCTTAACAAAGCACTTAACATGATCAATATAACCCATCTGAATTTTTGAATACATTAGAAtcttaaataatgaatattcaagatattaaacattaaaagagTTTctagttttaaagaaaaaatatccccagattttcaatgtgatctcagacttttgggccccactatattattaataattaatcattagGAGTGAATTAATTGTAcagctaaattttttttaaaaattaaaaaaagagtaaattgtaattgttttgtctttaaaattaaTTGCCTTTgcttcctgtttgtgtttgtttattttggtaAGCAAAATATCATATAGGTTTAAAAGGGTCTTAGTCCTCCTAGTACATAGCGCACTGGTACGATCTGCTCATGTGTACAAACAACAATATAAGCTAACAAATCAACACTTCACAATAGAAGGctacaaatacatttattggAGAAACATAACGATATGCATCAGATAAGGCACGAGCCTTCACTGTCTGAAAACTCACTGGTGTTTTTTATCCAAATTGAAACCAACATGCTGGACTCTGCTGAAATAAATACGAACATGCCTGAACATGAGCTactgattaattaatgaatgaaaatacttgtgtacaaacaaaaatgactttATGCCTGTTATAAAGTTCCTTCAAGTGttcaaaattcattaaataaagaCCCATAGATGGGACTATGGGGAAAGGAATGCGCCTGTCTGCATTGTGAAACACCCTGGAAATGAGATGACACGTATTTtgaatgtataataaaataaatacaagctA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84807 lncRNA upstream 102273 26872676 ~ 26881469 (+) True gng7
TU84796 lncRNA upstream 127137 26808057 ~ 26856605 (+) True G71557
TU84789 lncRNA upstream 197182 26784572 ~ 26786560 (+) True G71550
TU84751 lncRNA upstream 315614 26667762 ~ 26668128 (+) True G71519
TU84702 lncRNA upstream 432716 26472575 ~ 26551026 (+) True G71485
TU85145 lncRNA downstream 29058 27042703 ~ 27042912 (+) True G71819
TU85154 lncRNA downstream 60196 27073841 ~ 27074076 (+) True G71827
TU85197 lncRNA downstream 182356 27196001 ~ 27196373 (+) True G71864
TU85201 lncRNA downstream 203707 27217352 ~ 27217839 (+) True G71868
TU85202 lncRNA downstream 204582 27218227 ~ 27218455 (+) True G71869
XM_026936088.2 mRNA upstream 31885 26941327 ~ 26951857 (+) False LOC113539948
XM_026936089.2 mRNA upstream 31885 26941327 ~ 26951857 (+) False LOC113539948
XM_026936086.2 mRNA upstream 31885 26947719 ~ 26951857 (+) True LOC113539948
XM_026936087.2 mRNA upstream 31885 26947719 ~ 26951857 (+) False LOC113539948
XM_034304003.1 mRNA upstream 81376 26900847 ~ 26902366 (+) True gpr160
XM_026937317.2 mRNA downstream 17095 27030740 ~ 27038359 (+) True LOC113540681
XM_034303201.1 mRNA downstream 17095 27030740 ~ 27038359 (+) False LOC113540681
XM_026935836.2 mRNA downstream 130419 27144064 ~ 27151124 (+) True ebna1bp2
XM_034304033.1 mRNA downstream 160416 27174061 ~ 27237097 (+) True LOC113540389
XM_034304034.1 mRNA downstream 160416 27174061 ~ 27237097 (+) False LOC113540389
XR_003404105.1 other upstream 319660 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 607963 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 619509 26353189 ~ 26364233 (+) False LOC117597079
XR_004578101.1 other upstream 690958 26288292 ~ 26292784 (+) False zgc:66427
XR_003404108.2 other downstream 99503 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 475608 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 542872 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 544120 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 606960 27620605 ~ 27620677 (+) True trnat-ugu_6

Expression Profile