RNA id: XM_026937342.2


Basic Information

Item Value
RNA id XM_026937342.2
length 2641
RNA type mRNA
GC content 0.43
exon number 3
gene id si:dkey-19b23.8
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16460591 ~ 16465228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGACGCGCGTTCCGTTCTGCATACTGAGGTGAAGTCTGGAGGAAAGGGAGAAGGAGCATGTTTCAGTGTGTGCTGGAAGGCTTCACAGCGCTGAGAAAGTCCACCAAGTTATTAGCTCTTAACTAAAACAAAATAGTACGTCAAGGCACTTTTTGAAATCGCTATCAACACCGGtattttgggcttttttttctttttttaaaaaacttaaacCAGTGACTGCTTTGTAAATGTGAGAAGGCAACTTAACGGCGATACTGAGAGGAAaaacttttcccttttttccttcGTACGGACACGGAAACGTAGAAAGAGCGGATGATagATCCTGGAGGTAAATCCTAACACTCTGTTCTGTGACGGTTACTGGAAAAAGGGAAGAAGGACCCCTCTTCTCCTAAAAGCATCTGTCACATTCAGGCCTCTCCCAATATGTCTCTGGCCTCCTTCCACTTGATGCAGGCCCTGAAGAACTCTCCTGCAGCCCTGCGCAGACACTTTAAACGGGACCGCACAGAGAGTCTTTCCCATGGGGACCCCATATTCAAAGTGCACTATCTAGGCACCAAGAAGATCTTCTCCCTAGACCTGGAGCAGGCTGAGGAAGCCATTAACCGGCTCCTGGATGGTGCTCCTGGAAAGTTGTCCAAAGACCATGCTTTGGTGGTGCGGCCGCGATATGTGGAAGTGAAAGAGTTGAGCACAGGGAGGCAGCTAACCAAGACCTACCTGCATGACATTGCTTACTGCGCATCACACACGGCCCATCCCAACGTGTTCCTCTATATCTGCAGGCAACCTGGTCAGCAGCTGCAGTGTAGGGTGTTCTGGTGTAGTCGTGTGGAAAGGGCAAAGGATATGACGGCCTGCCTGGCAAACTCATTTCAGAGAGCACTAAATGACTGGCAAGATGGCTGTGCTACACTGCCAAAGGCAGAGGGCATCGCGAATAAGGATGAGGCTGACATCACCCCTGCTGCTGCCGCCAAAGGATTGACACTGCCAGCCAGTTTGGGGAAAGTCCGTTGGAAGAAGAAGGGCTCAATTTCCCGCAGTCCTCTGAGAGCCATCACCAGGCGCGGCTCAGCCAGTGAAAACTGGCCATGAGATTCCCAGCTACTGGACCTCTTGACCCCTATGGGATCCTACCAACAAGAAGGCACTTTCTCTCCATTCCCACCATCCCAACAAAGTGACAGATGACAATGGCTGGACCTGTCATAGCTTGACTCCAACAAACCTTTCTGGCATTGAAAGTACAGTTTTTACAGACTGGTGTTAGTTTGGACTGTTGCCACAGTTGCTGTCCTTGCTCCTTTAGGGCAAAGACACTGATGACTGACAAGGTGGGGTGAGCCAATAGTTCATAGATTATATGctggtcatttttatttcatgtattgCTTGTTTAATTGATAGCAGTATTGTTTGTATTTTCATCTCAAGACTTAAGGCCTTTAAAGACTTTTATGCAAGTACATGcagattaatatatatattaccaaAGTAAAACTGACCTAACCAGTGGCTGAAAGTAAGGAGGTTCTTTTGATTAggattattaatacattttttcccctctaaatACAATACGCTTGGCTGGTGGGAAGAAACATCGAAACCAGGAATGAGCCCTTGTGTTAGGCATGTTGCATCAGGGATTTGTGAAATAACAGGGAGGATGCAGGAACCGCAGTGTTGCAATGGAAGTTCTATCCCTATTACCACCCAAAACCGCAGTTGCAAACCACCACAATTACAAGTTACACAAAATTTCACATATACTTTTGGTGCAGTTTCTAACCAGAGGAAGAAAGCCACACATTTAAACCTGTATTCATCTTGTATTCTTTTAACTGCTTTAGAATATCCACATTGAGATTAGACTTGATCTTCCAGAGTTTTTCCATCATTTCATTTGCCACTAACCATAAAGTAGGGTAATAAGCCAAGAGAAAATTTCCAAAAGAAAATAAGTAGCAcagtgcatgtttgtgtgtgcactgagtGAAAGAACACAATGTGCCCTGTGCGGTCTGTGTAGGATTCATGCCGTGCACCTGCATTCCAATAGGGCCATTCTGAACTCCTTTATGTTCCTTCCTATCTTCAGTCTACTTTCTGCCATCAGGACTGCAGATTTTGAAAATcaaattttaccttttttttttttttttttagcatgttctTGTTAAGCTAGTGACATCAAAATgctaatttgtgtgtgcattttagcATTAAGAGCAACAGTCGTGTATATGTTTGGCTTAGTAGCATAAGACAAGTATGTTAAACAGGATTAAATGCTACAGATTTGACTGCTGTACATGACCTTGCTAGTCCATACGTTGCTATTTTACAGTCAATATTGTTAATACATATTCTAATTGGAAGTATCTGCATGTTTAATGTTGACCTACAGTATCTTAACATCCAGGCAGTTGGCTCAATTATCTTTTGGATATTTTATCCTCATTGGTTTTAATCTAATACAAGGACACCAAACCTGCCTCCAGGATCTGAGTGTCTGCTCAAgggtttttattaatgtctaatgaatgtgcatgtttttgttttatattttttgtgtacatatttatatatatgtattttcaaaaattaaacttttataCAGTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77544 lncRNA upstream 17691 16431945 ~ 16442900 (+) True G65495
TU77422 lncRNA upstream 29905 16430461 ~ 16430686 (+) True G65395
TU77409 lncRNA upstream 68228 16392129 ~ 16392363 (+) True G65382
TU77337 lncRNA upstream 229476 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 397130 16062088 ~ 16063461 (+) True G65199
TU77609 lncRNA downstream 49409 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 104459 16569687 ~ 16577737 (+) True G65580
TU77679 lncRNA downstream 127219 16592447 ~ 16594457 (+) True G65601
TU77739 lncRNA downstream 211301 16676529 ~ 16677366 (+) True G65643
TU77740 lncRNA downstream 258667 16723895 ~ 16729352 (+) True G65644
XM_026937151.2 mRNA upstream 41661 16372007 ~ 16418930 (+) True chd3
XM_026937150.2 mRNA upstream 48890 16371997 ~ 16411701 (+) False chd3
XM_026937149.2 mRNA upstream 48890 16372001 ~ 16411701 (+) False chd3
XM_026937152.2 mRNA upstream 48890 16374938 ~ 16411701 (+) False chd3
XM_026937153.2 mRNA upstream 89634 16367967 ~ 16370957 (+) True LOC113540582
XM_034304130.1 mRNA downstream 5032 16470260 ~ 16490483 (+) True zpax4
XM_026936158.2 mRNA downstream 5032 16470260 ~ 16477852 (+) False zpax4
XM_026936157.2 mRNA downstream 5032 16470260 ~ 16477711 (+) False zpax4
XM_026936347.2 mRNA downstream 140468 16605696 ~ 16648129 (+) True shroom4
XM_026936348.2 mRNA downstream 155516 16620744 ~ 16648129 (+) False shroom4
XR_003404046.2 other upstream 89907 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 141425 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 420607 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1801655 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2191251 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 295291 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 295521 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 295753 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 296038 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 296344 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile